genome.fa.s101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000101.1 Hibiscus syriacus cultivar Beakdansim tig00000185_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67852

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4268--4319	19	2.7	20	93	3	88	28	30	15	25	1.96
14043--14084	17	2.4	18	80	8	50	54	2	0	42	1.13
14136--14221	42	2.0	42	97	0	163	54	9	8	27	1.60
19024--19061	19	2.0	19	89	0	58	10	21	21	47	1.80
27863--27915	19	2.9	19	69	30	53	56	0	1	41	1.10
27891--27958	26	2.9	24	83	14	88	60	0	1	38	1.06
28245--28293	21	2.3	21	92	0	80	22	22	18	36	1.95
28254--28320	21	3.2	20	81	6	62	29	22	19	28	1.98
28286--28329	20	2.2	20	95	0	79	43	20	18	18	1.89
28461--28507	22	2.1	22	92	0	76	21	40	14	23	1.90
31272--31318	19	2.5	19	96	0	85	34	23	12	29	1.92
31798--31867	19	3.6	20	80	5	72	24	14	22	38	1.91
31859--31904	21	2.2	21	92	0	74	39	17	23	19	1.92
31912--31965	20	2.7	20	79	0	72	25	11	29	33	1.91
33784--33859	35	2.2	35	90	0	116	39	22	1	36	1.63
34255--34502	130	1.9	130	93	0	424	36	14	12	35	1.85
34269--34533	130	2.0	129	82	4	318	40	13	12	33	1.83
34831--34893	28	2.3	27	81	8	72	46	1	1	50	1.20
35748--35789	20	2.2	19	86	4	57	11	7	16	64	1.48
36820--36853	17	2.0	17	88	11	52	55	5	2	35	1.39
38486--38570	42	2.0	42	100	0	170	44	20	14	21	1.86
43711--44735	257	4.0	257	96	1	1929	33	17	19	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47723--47762	21	1.9	21	84	0	53	20	10	2	67	1.31
48375--48434	23	2.6	23	89	0	84	43	10	15	31	1.79
48241--48728	158	3.1	158	91	0	753	43	12	11	32	1.77
48533--48592	23	2.6	23	89	0	84	43	10	15	31	1.79
48797--48971	72	2.4	74	90	2	273	37	16	13	32	1.88
49051--49526	112	4.3	112	82	10	590	42	12	13	31	1.80
54022--54053	17	1.9	16	93	6	55	21	6	6	65	1.38
54022--54080	28	2.1	29	83	3	75	25	8	8	57	1.56
61596--61649	28	1.9	28	84	0	72	59	5	1	33	1.31
63413--63452	19	2.1	19	85	0	53	47	0	2	50	1.14
66008--66050	16	2.7	15	85	7	50	51	2	2	44	1.27
67071--67590	258	2.0	260	93	6	899	32	17	15	34	1.91

Tables:   1

The End!