genome.fa.s1011.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001011.1 Hibiscus syriacus cultivar Beakdansim tig00002017_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118747

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10416--10550	68	2.0	68	95	0	243	33	21	17	28	1.95
11607--11657	18	2.7	20	73	17	54	23	17	19	39	1.92
12561--12674	59	1.9	59	83	1	147	43	18	7	29	1.78
17278--17754	20	24.2	20	77	13	408	40	24	19	15	1.90
17379--17746	60	6.2	58	86	10	466	38	25	20	15	1.92
18026--18071	19	2.5	19	75	10	51	41	0	8	50	1.33
18262--18288	6	4.5	6	100	0	54	0	14	51	33	1.43
18391--18550	20	7.8	20	85	12	218	16	20	26	36	1.94
18384--18631	40	6.1	41	82	10	255	15	19	23	41	1.89
18384--18631	20	12.2	20	78	10	159	15	19	23	41	1.89
19545--19586	20	2.2	19	88	12	68	23	28	9	38	1.86
23589--23654	30	2.2	30	83	2	78	30	12	6	51	1.63
23745--23813	30	2.3	30	84	0	93	42	13	7	37	1.71
24437--24465	4	7.2	4	100	0	58	75	0	24	0	0.80
25507--25533	14	1.9	14	100	0	54	29	37	14	18	1.91
34418--34462	23	2.0	23	86	8	65	53	2	8	35	1.45
34859--34896	16	2.3	17	86	4	51	28	2	0	68	1.03
36930--36980	26	2.0	26	85	7	70	47	1	3	47	1.32
36949--36992	23	1.9	23	90	0	70	45	0	4	50	1.22
48309--48560	132	1.9	132	91	3	418	27	12	15	44	1.83
50088--50161	33	2.2	33	87	0	103	32	32	14	20	1.93
50111--50382	33	8.2	33	82	3	278	27	34	18	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50392--50467	33	2.3	32	80	8	82	32	30	14	22	1.94
51292--51497	33	6.2	33	89	0	268	33	16	33	15	1.91
51322--51381	15	3.8	15	72	12	57	36	15	33	15	1.88
51387--51439	15	3.3	15	70	14	52	32	15	33	18	1.92
54255--54307	20	2.7	21	88	8	76	66	0	1	32	1.03
54666--54770	36	2.9	36	87	5	158	39	14	24	21	1.91
54899--56722	106	17.2	106	93	0	2969	23	17	25	33	1.96
59479--59511	17	1.9	17	93	0	57	72	9	12	6	1.26
62105--62157	20	2.7	21	88	8	76	66	0	1	32	1.03
75401--75464	29	2.1	32	85	11	89	56	3	1	39	1.25
75668--75710	22	2.0	22	90	0	68	39	0	9	51	1.34
75636--75759	54	2.3	55	94	1	214	37	0	9	52	1.35
75690--76035	80	4.3	78	74	17	298	35	0	11	52	1.41
75769--75876	32	3.7	32	74	23	137	34	0	12	52	1.40
75802--75844	22	2.0	22	95	0	77	34	0	11	53	1.37
75770--76220	54	8.3	54	83	10	587	36	0	11	51	1.42
75636--75930	134	2.2	136	90	5	463	36	0	11	51	1.38
75860--76003	22	5.8	22	67	24	81	37	0	11	50	1.44
75860--75951	21	3.9	21	71	23	67	38	0	11	50	1.40
75770--76220	159	2.8	164	86	8	591	36	0	11	51	1.42
75929--76121	32	6.7	32	76	22	219	36	0	10	51	1.41
75774--76220	213	2.1	218	86	7	617	36	0	11	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75929--76283	86	4.2	84	79	10	279	35	0	11	52	1.42
75909--76136	22	12.8	20	63	30	99	36	0	11	51	1.42
76065--76315	54	4.7	52	73	15	181	35	0	11	52	1.40
76125--76203	32	2.5	32	89	4	126	35	1	11	51	1.46
76142--76198	18	3.4	18	69	18	59	31	1	12	54	1.48
76263--76305	22	2.0	22	95	0	77	39	0	6	53	1.28
76330--76388	31	1.9	31	89	0	91	44	10	5	40	1.60
76408--76448	16	2.6	16	96	0	73	24	7	7	60	1.48
83034--83066	12	2.8	12	95	0	57	54	0	45	0	0.99
90883--90920	19	2.0	19	100	0	76	57	5	10	26	1.53
94059--94172	35	3.3	35	83	0	138	42	19	0	37	1.57
96562--96603	22	1.9	22	95	0	75	69	7	9	14	1.37
97593--97648	26	2.2	25	83	3	67	39	3	3	53	1.36
97822--97877	23	2.3	23	79	11	60	26	3	12	57	1.52
114933--114991	28	2.1	28	100	0	118	35	8	25	30	1.86
118596--118625	6	5.0	6	100	0	60	66	0	0	33	0.92

Tables:   1

The End!