Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001012.1 Hibiscus syriacus cultivar Beakdansim tig00002018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53619

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2744--2777
13
2.6
13
95
0
59
35
23
8
32
1.86
5688--5731
18
2.4
19
88
3
63
18
4
2
75
1.09
5799--5862
15
4.2
15
72
20
53
25
1
0
73
0.92
9673--10568
134
6.7
133
79
3
809
32
23
15
29
1.95
9673--10545
399
2.2
399
80
5
913
31
23
15
29
1.95
12499--12550
3
17.3
3
92
7
88
32
0
0
67
0.91
15791--15923
30
4.4
30
95
0
230
24
19
23
32
1.98
20515--20586
2
36.0
2
100
0
144
50
0
0
50
1.00
20994--21053
30
2.0
30
96
0
111
23
20
21
35
1.96
26496--26527
2
16.0
2
100
0
64
50
0
0
50
1.00
27677--27727
3
17.3
3
88
11
79
66
0
0
33
0.92
27945--28091
36
4.1
36
95
0
267
18
18
17
45
1.86
40183--40225
22
2.1
21
87
12
63
0
13
27
58
1.37
40764--40802
3
13.3
3
94
5
71
66
0
0
33
0.92
40824--40868
18
2.5
19
86
10
60
57
0
0
42
0.98
40833--40868
2
18.5
2
88
5
56
55
0
0
44
0.99
43160--43199
6
6.7
6
88
0
62
15
50
15
20
1.79
43500--43593
47
2.0
47
95
0
170
19
13
27
39
1.89
43626--43948
174
1.9
174
83
3
427
34
13
17
34
1.88

Tables:   1

The End!