genome.fa.s1013.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001013.1 Hibiscus syriacus cultivar Beakdansim tig00002019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69385

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6954--7013	30	2.0	30	96	0	111	38	11	10	40	1.75
14142--14170	14	2.0	15	93	6	51	51	0	0	48	1.00
16076--16141	30	2.2	31	89	8	100	66	9	9	15	1.43
16165--16229	30	2.2	30	85	0	85	58	9	10	21	1.59
17627--17667	20	2.0	20	86	9	57	68	2	0	29	1.03
17924--18193	40	6.4	40	68	15	141	23	18	33	24	1.96
17880--18065	84	2.2	84	87	0	257	22	18	34	24	1.96
17958--18343	130	2.9	129	86	3	522	24	17	32	25	1.97
18397--18472	34	2.2	36	78	7	84	42	14	19	23	1.88
18413--18484	35	2.1	35	97	2	137	33	11	23	31	1.90
18414--18494	34	2.5	32	86	9	85	38	12	22	27	1.90
18447--18666	67	3.4	64	82	9	261	42	13	16	28	1.85
18736--18805	32	2.2	32	92	0	113	30	24	17	28	1.97
19851--19892	13	3.4	12	84	12	50	2	9	7	80	0.97
19862--19899	13	2.9	14	92	7	62	0	13	7	78	0.94
19862--19899	14	2.8	13	88	7	58	0	13	7	78	0.94
19868--19918	20	2.6	21	78	12	63	0	15	9	74	1.06
19877--19936	20	2.6	24	77	20	74	0	20	11	68	1.20
23631--23715	29	2.9	29	85	1	89	60	12	10	16	1.60
23643--23717	29	2.5	30	86	4	107	58	13	10	17	1.62
23712--23786	30	2.5	30	84	0	96	58	9	10	21	1.59
24936--24974	20	2.0	20	89	0	60	23	25	46	5	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25218--25268	3	16.3	3	92	8	84	64	0	0	35	0.94
30409--30474	2	33.0	2	100	0	132	50	0	0	50	1.00
30608--30642	15	2.3	15	90	0	52	57	2	8	31	1.44
34148--34411	133	2.0	132	95	0	474	41	18	14	25	1.88
39974--40028	26	2.2	25	80	9	58	47	7	10	34	1.66
40315--40390	24	3.2	24	78	0	80	55	21	15	7	1.66
40317--40371	14	4.2	14	73	17	55	54	27	14	3	1.57
40516--40568	24	2.2	24	93	0	88	62	13	9	15	1.54
40909--40947	17	2.2	19	86	13	57	35	2	0	61	1.10
47470--47526	18	3.2	18	84	0	78	19	43	22	14	1.86
52319--52375	18	3.2	18	84	0	78	19	45	22	12	1.83
53675--53708	18	1.9	18	88	5	52	50	0	20	29	1.49
57221--57250	13	2.3	13	94	0	51	20	33	26	20	1.97
57228--57263	18	2.0	18	88	0	54	16	38	25	19	1.92
58566--58599	18	1.9	18	88	5	52	50	0	20	29	1.49
61265--61308	22	2.0	23	86	4	63	43	4	6	45	1.51
62097--62161	12	5.4	12	75	14	53	46	7	20	26	1.77
62092--62167	24	3.2	24	86	0	107	42	9	21	27	1.83
63029--63097	23	3.0	23	84	0	93	30	23	27	18	1.98
63173--63236	14	4.4	14	75	7	65	40	21	7	29	1.82
63173--63283	46	2.5	46	85	2	136	36	20	7	35	1.80
66411--66443	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66691--66732	20	2.2	20	82	4	50	73	2	0	23	0.94
68064--68134	21	3.5	19	71	17	63	40	1	2	54	1.23
68868--68922	21	2.6	22	75	18	62	41	7	20	30	1.79

Tables:   1

The End!