Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001016.1 Hibiscus syriacus cultivar Beakdansim tig00002028_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91452

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5648--5685
15
2.4
16
86
8
51
34
0
0
65
0.93
5696--5747
26
2.0
26
84
3
68
36
13
3
46
1.62
6353--6521
88
1.9
88
95
0
302
40
10
14
34
1.80
8781--8857
16
4.8
16
90
0
127
9
11
22
57
1.62
8804--8861
10
6.6
10
69
28
51
8
10
22
58
1.58
9890--10054
65
2.6
66
85
7
207
36
17
14
30
1.90
27943--27990
24
2.1
24
84
7
64
29
6
4
60
1.40
36300--36420
31
3.9
31
84
3
118
35
14
11
38
1.82
36301--36425
62
2.0
62
81
7
146
35
13
12
39
1.82
38510--38570
21
3.2
21
65
29
64
31
4
21
42
1.74
38502--38620
35
3.3
37
88
8
174
31
5
19
43
1.72
39032--39063
16
1.9
17
93
6
57
37
6
21
34
1.79
43104--43187
37
2.3
38
85
6
111
34
3
19
42
1.68
46780--46940
64
2.5
63
85
7
191
32
18
21
26
1.97
48303--48597
149
2.0
148
89
2
448
28
14
20
36
1.92
48576--48620
23
2.0
23
90
0
72
22
26
26
24
2.00
53008--53034
2
13.5
2
100
0
54
51
0
0
48
1.00
58484--58533
2
25.0
2
100
0
100
50
0
0
50
1.00
68571--68610
12
3.6
12
77
16
50
35
0
0
65
0.93
68573--68618
22
2.1
22
88
8
67
30
0
2
67
1.03
71018--71064
21
2.2
21
92
0
76
70
10
4
14
1.31
73447--73499
21
2.6
20
74
14
54
50
0
1
47
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73510--73572
22
2.9
22
88
6
76
49
3
0
47
1.17
73528--73570
11
4.1
10
82
8
50
46
2
0
51
1.13
74499--74541
20
2.2
20
100
0
86
23
18
20
37
1.94
80946--81070
24
5.2
23
80
9
108
42
20
12
25
1.86
80947--81060
48
2.4
48
89
2
167
40
20
13
26
1.89

Tables:   1

The End!