genome.fa.s1017.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001017.1 Hibiscus syriacus cultivar Beakdansim tig00002029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85813

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111--1162	27	1.9	27	84	7	70	21	13	7	57	1.61
4317--4377	20	3.0	20	92	4	97	27	21	14	36	1.93
4969--5016	14	3.5	14	81	18	57	70	8	18	2	1.22
6240--8359	4	543.0	4	92	5	3592	49	26	0	24	1.52
8713--8820	37	2.9	36	82	6	128	37	17	10	34	1.84
9141--9242	29	3.6	28	78	15	111	34	8	15	41	1.78
9205--9357	60	2.5	59	88	4	218	33	11	13	41	1.79
9324--9382	29	2.0	30	90	3	93	37	6	15	40	1.74
9708--10049	134	2.6	133	86	1	443	26	30	19	23	1.98
9708--10088	134	2.8	133	82	3	392	25	31	18	24	1.98
10258--10315	3	20.0	3	80	7	66	32	0	5	62	1.18
11810--11881	30	2.4	30	95	0	126	15	6	13	63	1.49
11810--11892	30	2.8	30	90	3	114	16	8	13	61	1.55
14881--15027	36	4.1	36	87	6	190	39	17	23	19	1.92
16262--16330	36	1.9	36	84	0	93	37	17	23	21	1.94
21144--21220	38	2.0	38	97	0	145	35	12	11	40	1.80
34127--34200	20	3.7	20	80	3	94	39	18	22	18	1.93
34124--34220	41	2.3	42	96	1	178	40	17	23	18	1.91
34209--34303	20	4.7	20	77	2	82	35	24	16	23	1.95
34205--34283	41	1.9	41	84	0	104	41	21	15	21	1.89
34491--34534	22	2.0	22	95	0	79	20	45	15	18	1.85
34798--34835	20	1.9	20	88	0	58	13	15	21	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36153--36197	18	2.5	18	81	0	54	28	42	13	15	1.85
36705--36794	32	2.8	33	93	5	157	46	23	18	11	1.81
36667--36799	19	7.6	19	71	20	83	42	24	21	12	1.87
36825--36891	19	3.5	19	83	4	89	14	23	23	37	1.93
36837--36891	20	2.8	19	89	5	83	16	25	23	34	1.95
38749--38784	14	2.6	14	90	0	54	30	0	22	47	1.52
38890--38966	14	4.7	15	74	22	59	45	19	22	12	1.84
38900--38966	18	3.8	19	81	18	92	46	17	22	13	1.83
38991--39041	20	2.5	20	93	0	84	19	23	23	33	1.97
39404--39439	14	2.6	14	90	0	54	30	0	22	47	1.52
39837--39889	19	3.1	18	71	25	51	15	18	20	45	1.85
40665--40723	24	2.5	24	82	0	73	28	16	18	35	1.93
40898--40922	12	2.1	12	100	0	50	72	0	28	0	0.86
43196--43313	19	6.7	19	71	19	94	42	19	23	14	1.88
43216--43309	33	2.8	33	98	0	179	43	19	24	12	1.85
43309--43351	20	2.2	20	87	4	61	16	18	23	41	1.89
43337--43370	14	2.4	14	85	0	50	8	23	20	47	1.78
43492--43528	14	2.6	14	91	0	65	45	24	0	29	1.53
44854--44920	21	3.2	21	68	4	55	19	20	35	23	1.95
44854--44976	42	2.9	41	80	7	113	22	17	36	22	1.95
46976--47136	20	8.8	19	70	16	90	43	21	21	13	1.86
47001--47099	33	3.0	33	87	1	135	39	25	23	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47071--47141	19	3.7	19	88	3	106	45	21	19	14	1.85
47137--47181	19	2.4	19	92	0	72	8	15	26	48	1.74
47736--47787	20	2.6	20	87	6	70	25	17	28	28	1.97
47798--47890	20	4.6	20	78	4	96	18	24	18	38	1.92
47780--47893	41	2.8	41	93	4	185	18	21	17	42	1.90
64824--64868	10	4.5	10	80	0	54	0	26	24	48	1.51
65318--65391	3	24.0	3	89	5	112	63	1	0	35	1.03
65516--66010	153	3.2	152	95	0	855	35	19	21	24	1.96
65516--66010	229	2.2	230	96	0	911	35	19	21	24	1.96
65516--66010	76	6.5	76	94	1	837	35	19	21	24	1.96
66414--67193	343	2.3	338	86	4	1129	29	19	13	37	1.90
66414--67205	113	7.0	112	87	5	1056	29	18	13	38	1.90
67607--67661	22	2.5	22	87	0	83	38	16	12	32	1.86
70189--70578	83	4.7	83	98	0	726	37	22	14	25	1.92
79811--79884	3	24.0	3	89	5	112	63	1	0	35	1.03
81761--81873	20	5.7	20	94	0	199	40	19	19	20	1.91
81860--81926	20	3.3	20	87	0	89	32	22	19	25	1.97
81761--81886	40	3.2	40	87	8	177	39	20	19	20	1.92
81873--81927	20	2.8	20	91	0	92	29	21	18	30	1.97
82761--82814	24	2.2	24	90	6	83	22	16	20	40	1.91
85213--85301	20	4.4	20	91	2	144	34	25	22	16	1.95
85273--85368	33	2.8	33	85	3	129	42	18	23	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85383--85477	32	2.9	31	84	9	109	12	22	21	44	1.85
85383--85477	34	2.9	33	84	9	97	12	22	21	44	1.85
85579--85613	14	2.5	14	85	0	52	48	20	0	31	1.50

Tables:   1

The End!