genome.fa.s1018.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001018.1 Hibiscus syriacus cultivar Beakdansim tig00002030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69943

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7328--7365	15	2.4	16	84	16	53	50	0	0	50	1.00
13617--13720	24	4.3	24	80	0	109	54	16	10	18	1.69
13617--13718	12	8.5	12	67	6	55	53	16	10	18	1.71
14593--14664	31	2.3	31	95	0	126	36	16	5	41	1.72
21124--21161	20	1.9	20	88	0	58	26	34	26	13	1.93
23327--23461	17	8.0	17	73	4	112	21	13	2	62	1.44
23299--23418	33	3.6	33	90	2	195	20	15	3	61	1.47
23351--23461	51	2.2	51	81	3	134	21	13	3	61	1.47
23397--23488	34	2.7	34	81	0	94	20	16	3	59	1.50
25362--25402	11	3.9	11	78	12	50	39	2	26	31	1.70
25362--25410	20	2.4	20	89	3	80	38	4	22	34	1.73
25373--25449	20	3.9	20	82	1	75	37	9	18	35	1.82
25466--25534	21	3.3	21	88	7	88	31	17	13	37	1.88
28265--28335	20	3.5	20	92	5	108	36	12	12	38	1.82
28965--29025	31	2.0	31	96	0	113	50	21	13	14	1.76
30730--30773	3	14.7	3	100	0	88	68	31	0	0	0.90
33169--33194	2	13.0	2	100	0	52	50	0	0	50	1.00
37427--37468	22	1.9	22	90	9	68	45	14	11	28	1.80
37608--37709	49	2.1	50	84	1	134	34	15	20	29	1.94
43170--43201	16	1.9	17	93	6	57	43	0	18	37	1.51
43698--44855	579	2.0	578	96	0	2111	29	21	16	32	1.95
47991--48156	85	2.0	85	93	0	287	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55777--55920	23	6.3	23	90	0	225	33	24	22	20	1.97
59882--59911	14	2.1	14	93	0	51	36	0	23	40	1.55
60700--60805	45	2.4	45	100	0	212	28	21	17	32	1.96
60599--60758	65	2.5	66	87	7	222	30	23	18	27	1.97
66620--66698	23	3.5	22	77	8	88	24	25	25	25	2.00
68563--68588	2	13.0	2	100	0	52	50	0	0	50	1.00
68830--68919	45	2.0	43	95	4	162	37	6	15	40	1.74
69269--69424	65	2.4	65	83	8	178	30	23	17	28	1.97

Tables:   1

The End!