Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001019.1 Hibiscus syriacus cultivar Beakdansim tig00002032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123050
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:6771 original size:33 final size:33
Alignment explanation
Indices: 6729--6823 Score: 181
Period size: 33 Copynumber: 2.9 Consensus size: 33
6719 AGTTGACAAG
6729 TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
1 TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
6762 TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
1 TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
*
6795 TTGGAGATTTCATCTTGGTTGGTGGCCAA
1 TTGGAAATTTCATCTTGGTTGGTGGCCAA
6824 ACTTTGAACA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 61 1.00
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (33 bp):
TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
Found at i:9434 original size:21 final size:21
Alignment explanation
Indices: 9408--9448 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9398 CAGACAAGTT
* *
9408 ATACTCCACAGCAGGTGGAGC
1 ATACTCCAAAACAGGTGGAGC
9429 ATACTCCAAAACAGGTGGAG
1 ATACTCCAAAACAGGTGGAG
9449 TTTCAGCAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.24, G:0.27, T:0.15
Consensus pattern (21 bp):
ATACTCCAAAACAGGTGGAGC
Found at i:16830 original size:29 final size:29
Alignment explanation
Indices: 16796--16857 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
16786 TGATTAGTTT
16796 CATGATTAGGTGACATTTTTTATGTAAAA
1 CATGATTAGGTGACATTTTTTATGTAAAA
*
16825 CATGATTAGGTGGCATTTTTTATGTAAAA
1 CATGATTAGGTGACATTTTTTATGTAAAA
16854 CATG
1 CATG
16858 TGTTTCTATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (29 bp):
CATGATTAGGTGACATTTTTTATGTAAAA
Found at i:17260 original size:32 final size:32
Alignment explanation
Indices: 17152--17262 Score: 114
Period size: 32 Copynumber: 3.5 Consensus size: 32
17142 CTTAGTGTCG
* * * *
17152 CATTCAGTTAATGCACAACAGGGTCAGTGTTA
1 CATTCAGATAATGCATAATAGTGTCAGTGTTA
* * * * *
17184 CATTTAGGTAATACATAATCGTGTCAGTGTCA
1 CATTCAGATAATGCATAATAGTGTCAGTGTTA
* * *
17216 CATTCAAATAATGCATAATAGTGTCAATGTTG
1 CATTCAGATAATGCATAATAGTGTCAGTGTTA
17248 CATTCAGATAATGCA
1 CATTCAGATAATGCA
17263 CAACATCGTA
Statistics
Matches: 62, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (32 bp):
CATTCAGATAATGCATAATAGTGTCAGTGTTA
Found at i:22296 original size:3 final size:3
Alignment explanation
Indices: 22290--22361 Score: 87
Period size: 3 Copynumber: 24.7 Consensus size: 3
22280 TTTTTAATAA
*
22290 TAT TAT TAT TAT TAT TAT T-T TAT T-T ATAC TAT TAT TAT TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
* *
22333 TAT TAT TAT TAT TAA TAA TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
22362 CAAACAGACC
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
2 5 0.08
3 56 0.92
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:22311 original size:32 final size:31
Alignment explanation
Indices: 22275--22361 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 31
22265 TCCATTTGTT
22275 TTTTATTTTTAATAATATTATTATTATTATTA
1 TTTTATTTTTAATAATATTATTATTATTA-TA
*
22307 TTTTA--TTT-ATACTATTATTATTATTATA
1 TTTTATTTTTAATAATATTATTATTATTATA
*
22335 TTATTATTATTAATAATATTATTATTA
1 TT-TTATTTTTAATAATATTATTATTA
22362 CAAACAGACC
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 4 0.08
29 20 0.42
30 3 0.06
31 2 0.04
32 19 0.40
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (31 bp):
TTTTATTTTTAATAATATTATTATTATTATA
Found at i:22322 original size:17 final size:17
Alignment explanation
Indices: 22290--22361 Score: 82
Period size: 17 Copynumber: 4.5 Consensus size: 17
22280 TTTTTAATAA
22290 TATTATTATTAT--TAT
1 TATTATTATTATACTAT
22305 TATT-TTATTTATACTAT
1 TATTATTA-TTATACTAT
*
22322 TATTATTATTATATTAT
1 TATTATTATTATACTAT
*
22339 TATTATTA--ATAATAT
1 TATTATTATTATACTAT
22354 TATTATTA
1 TATTATTA
22362 CAAACAGACC
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
14 3 0.06
15 22 0.43
17 23 0.45
18 3 0.06
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (17 bp):
TATTATTATTATACTAT
Found at i:22332 original size:29 final size:32
Alignment explanation
Indices: 22277--22361 Score: 122
Period size: 32 Copynumber: 2.8 Consensus size: 32
22267 CATTTGTTTT
*
22277 TTATTTTTAATAATATTATTATTA-T-TATTA
1 TTATTATTAATAATATTATTATTATTATATTA
* *
22307 TT-TTATTTATACTATTATTATTATTATATTA
1 TTATTATTAATAATATTATTATTATTATATTA
22338 TTATTATTAATAATATTATTATTA
1 TTATTATTAATAATATTATTATTA
22362 CAAACAGACC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
29 18 0.38
30 3 0.06
31 7 0.15
32 19 0.40
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (32 bp):
TTATTATTAATAATATTATTATTATTATATTA
Found at i:23423 original size:21 final size:21
Alignment explanation
Indices: 23399--23438 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23389 ATTTTAGCCC
*
23399 TTTACATAAAATAGTAGATAT
1 TTTACATAAAATAATAGATAT
**
23420 TTTAGGTAAAATAATAGAT
1 TTTACATAAAATAATAGAT
23439 TTAGTCATCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (21 bp):
TTTACATAAAATAATAGATAT
Found at i:23760 original size:8 final size:7
Alignment explanation
Indices: 23676--23766 Score: 50
Period size: 6 Copynumber: 12.7 Consensus size: 7
23666 TTTTATTACT
23676 TTTTATA
1 TTTTATA
23683 TTTTA-A
1 TTTTATA
**
23689 TACTATA
1 TTTTATA
23696 GTTTTA-A
1 -TTTTATA
23703 TTTTATTTA
1 TTTTA--TA
23712 TTTTAGTCA
1 TTTTA-T-A
23721 TTGTT-TA
1 TT-TTATA
23728 -TTTATA
1 TTTTATA
23734 -TTTATA
1 TTTTATA
23740 TTTTA-A
1 TTTTATA
23746 TTTTATA
1 TTTTATA
23753 TGTTTATA
1 T-TTTATA
23761 TATTTA
1 T-TTTA
23767 ATTATTATTG
Statistics
Matches: 67, Mismatches: 6, Indels: 21
0.71 0.06 0.22
Matches are distributed among these distances:
5 2 0.03
6 24 0.36
7 14 0.21
8 16 0.24
9 9 0.13
10 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (7 bp):
TTTTATA
Found at i:23762 original size:23 final size:22
Alignment explanation
Indices: 23734--23779 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
23724 TTTATTTATA
23734 TTTATAT-TTTAATT-TTATATG
1 TTTATATATTTAATTATTAT-TG
23755 TTTATATATTTAATTATTATTG
1 TTTATATATTTAATTATTATTG
23777 TTT
1 TTT
23780 TTATTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.30
22 12 0.52
23 4 0.17
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTATATATTTAATTATTATTG
Found at i:23845 original size:14 final size:15
Alignment explanation
Indices: 23821--23852 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
23811 ATAAATAATA
23821 TTTATTTACTTATTT
1 TTTATTTACTTATTT
23836 TTTA-TTACTTATTT
1 TTTATTTACTTATTT
23850 TTT
1 TTT
23853 TATATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTATTTACTTATTT
Found at i:24186 original size:2 final size:2
Alignment explanation
Indices: 24179--24218 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
24169 AAAAATAAAG
24179 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24219 TTTCTTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:35503 original size:18 final size:18
Alignment explanation
Indices: 35482--35531 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
35472 TATCTTTTTG
35482 AAATTCAATTTATTTTCA
1 AAATTCAATTTATTTTCA
*
35500 AAATTCAATTTATTTTTA
1 AAATTCAATTTATTTTCA
35518 AAATTCAATTTATT
1 AAATTCAATTTATT
35532 CTTTCATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (18 bp):
AAATTCAATTTATTTTCA
Found at i:35812 original size:20 final size:20
Alignment explanation
Indices: 35787--35852 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
35777 AATGTTTTAC
35787 GAACCAGTAATTATGGTGCT
1 GAACCAGTAATTATGGTGCT
* * *
35807 GAACCAATAATTATAGTGTT
1 GAACCAGTAATTATGGTGCT
**
35827 GAACCAGTAATTATGGCACT
1 GAACCAGTAATTATGGTGCT
35847 GAACCA
1 GAACCA
35853 ATGTTGCGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (20 bp):
GAACCAGTAATTATGGTGCT
Found at i:36210 original size:22 final size:22
Alignment explanation
Indices: 36184--36254 Score: 124
Period size: 22 Copynumber: 3.2 Consensus size: 22
36174 TACATTCTTT
36184 AAAGATGATATATTCTCTTTTC
1 AAAGATGATATATTCTCTTTTC
*
36206 AAAGATGATATATTCTCTCTTC
1 AAAGATGATATATTCTCTTTTC
*
36228 AAAGATGATACATTCTCTTTTC
1 AAAGATGATATATTCTCTTTTC
36250 AAAGA
1 AAAGA
36255 AGAAAGATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (22 bp):
AAAGATGATATATTCTCTTTTC
Found at i:36851 original size:122 final size:122
Alignment explanation
Indices: 36634--37326 Score: 1009
Period size: 122 Copynumber: 5.7 Consensus size: 122
36624 CACTCAATGG
* * * *
36634 ATCAATATTTCCGGAAGAGTTCATAATGAGAATAACTCATCTGAAGAAGG-AGAAGAAGTTCATA
1 ATCAACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCATA
*
36698 ATAAGAAGAACTTGTTCAACCTTTTGCTTGATTTTATCCCAGAAGGAGATAGATCAGC
65 ATGAGAAGAACTTGTTCAACCTTTTGCTTGATTTTATCCCAGAAGGAGATAGATCAGC
* *
36756 ATCAACATTACCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAAAAGAAGTTCATAA
1 ATCAACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
* * *
36821 TGAGAAGAA-TGTGTTCAACCTTTTGCTTGATTTTATCCCAAAAGGAGATAAATCAAC
66 TGAGAAGAACT-TGTTCAACCTTTTGCTTGATTTTATCCCAGAAGGAGATAGATCAGC
* *
36878 ATCAACATTACCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTGATAA
1 ATCAACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
36943 TGAGAAGAACTTGTTCAACCTTTTGCTTGATTTTATCCCAGAAGGAGATAGATCAGC
66 TGAGAAGAACTTGTTCAACCTTTTGCTTGATTTTATCCCAGAAGGAGATAGATCAGC
* *
37000 ATCAACATTTCCAGAAAAGTTCATAATAAGAATAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
1 ATCAACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
* * * * * *
37065 TGAGAAGAGCTTGTTCAACCTTTTGCATGACTCTATCACAGAAGGAGATAGATCATC
66 TGAGAAGAACTTGTTCAACCTTTTGCTTGATTTTATCCCAGAAGGAGATAGATCAGC
* * * * *
37122 ATCAGCTTTTCCAGAGAAAGATCATAATGAGAAGAACTTATCTAAAGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGA-AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * * *
37187 ATGAGAAGAACTTGTTCAACC-TTTGCATGACTCTATCACAGAAGGAGATAGATCAGC
65 ATGAGAAGAACTTGTTCAACCTTTTGCTTGATTTTATCCCAGAAGGAGATAGATCAGC
* * * *
37244 ATCAACATTTCTA-AAAGTGTTTATAATGAGAAGAACTTATCTGAAGAAGG-AGAAGAAGTTCAT
1 ATCAACATTTCCAGAAA-AGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCAT
37307 AATGAGAAGAACTTGTTCAA
64 AATGAGAAGAACTTGTTCAA
37327 TCTTGCCTTA
Statistics
Matches: 524, Mismatches: 41, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
120 2 0.00
121 63 0.12
122 394 0.75
123 65 0.12
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (122 bp):
ATCAACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCAACCTTTTGCTTGATTTTATCCCAGAAGGAGATAGATCAGC
Found at i:37203 original size:20 final size:20
Alignment explanation
Indices: 37143--37204 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
37133 CAGAGAAAGA
*
37143 TCATAATGAGAAGAACTT-A
1 TCATAATGAGAAGAACTTGT
* ***
37162 TC-TAAAGAGGAAGAAGAAGT
1 TCATAATGA-GAAGAACTTGT
37182 TCATAATGAGAAGAACTTGT
1 TCATAATGAGAAGAACTTGT
37202 TCA
1 TCA
37205 ACCTTTGCAT
Statistics
Matches: 31, Mismatches: 9, Indels: 5
0.69 0.20 0.11
Matches are distributed among these distances:
18 5 0.16
19 8 0.26
20 13 0.42
21 5 0.16
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.24
Consensus pattern (20 bp):
TCATAATGAGAAGAACTTGT
Found at i:37711 original size:3 final size:3
Alignment explanation
Indices: 37693--37761 Score: 65
Period size: 3 Copynumber: 24.0 Consensus size: 3
37683 CATTTCTTTT
* * *
37693 TTA TTT TTA ATA TTA TTA TTA TT- TTA TT- TATA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
37737 TT- TTA TTA TT- TTA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
37762 CAAACAGACC
Statistics
Matches: 53, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
2 7 0.13
3 46 0.87
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:37719 original size:8 final size:8
Alignment explanation
Indices: 37697--37754 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
37687 TCTTTTTTAT
*
37697 TTTTAATA
1 TTTTATTA
37705 TTATTATTA
1 TT-TTATTA
37714 TTTTA-T-
1 TTTTATTA
* *
37720 TTATACTA
1 TTTTATTA
37728 TTATTATTA
1 TT-TTATTA
37737 TTTTATTA
1 TTTTATTA
37745 TTTTATTA
1 TTTTATTA
37753 TT
1 TT
37755 ATCATTACAA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 4 0.10
7 2 0.05
8 23 0.55
9 13 0.31
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (8 bp):
TTTTATTA
Found at i:37720 original size:23 final size:22
Alignment explanation
Indices: 37691--37756 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 22
37681 TCCATTTCTT
37691 TTTTATTTTTAATATTATTATTA
1 TTTTATTTTT-ATATTATTATTA
*
37714 TTTTATTTATACTATTATTATTA
1 TTTTATTTTTA-TATTATTATTA
37737 TTTTATTATTT-TATTATTAT
1 TTTTATT-TTTATATTATTAT
37757 CATTACAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
22 10 0.26
23 27 0.69
24 2 0.05
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTTATTTTTATATTATTATTA
Found at i:38756 original size:21 final size:21
Alignment explanation
Indices: 38732--38771 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
38722 ATTTTAGTCC
38732 TTTACATAAAATAATAGATAT
1 TTTACATAAAATAATAGATAT
**
38753 TTTAGGTAAAATAATAGAT
1 TTTACATAAAATAATAGAT
38772 TTAGTGCTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.38
Consensus pattern (21 bp):
TTTACATAAAATAATAGATAT
Found at i:39096 original size:23 final size:22
Alignment explanation
Indices: 39057--39109 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
39047 TATTTTAGTC
39057 ATTGTTTATTTATATTTATATT-TT
1 ATTGTTTA--TATATTTA-ATTATT
39081 ATATGTTTATATATTTAATTATT
1 AT-TGTTTATATATTTAATTATT
39104 ATTGTT
1 ATTGTT
39110 ATTATTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
22 7 0.26
23 12 0.44
24 2 0.07
25 6 0.22
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (22 bp):
ATTGTTTATATATTTAATTATT
Found at i:39493 original size:149 final size:151
Alignment explanation
Indices: 39241--39525 Score: 436
Period size: 149 Copynumber: 1.9 Consensus size: 151
39231 TAATCATATT
*
39241 TTAATATTTATTTATTTTTTAATATTAAGAAATAGGTTGTCTTAAAGCACCTAGAAGTCCTTTTC
1 TTAATATTTATTTATTTTTTAATATTAAGAAATAGGCTGTCTTAAAGCACCTAGAAGTCCTTTTC
* * * *
39306 TGATATTCTTAAATAAATAAATATCCTTTTTTATAAAATATATATATAT-TA-ATTTATTTTAAT
66 TGATATTCTTAAATAAATAAATATCCTTATTTATAAAATAAAGATATATATAGATATA-TTTAAT
39369 -TATTTTTAGAGAAATGTTTTA
130 ATATTTTTAGAGAAATGTTTTA
* *
39390 TTAATATTTATTTATTTTTTAATATTAAGAAATGGGCTGTCTTAAAGCACCTAGAAGTCTTTTTC
1 TTAATATTTATTTATTTTTTAATATTAAGAAATAGGCTGTCTTAAAGCACCTAGAAGTCCTTTTC
*
39455 TGATATT-TCTAAGTAAATAAATAT-CTTATTTATAAAAATAAAGATATATATAGATATATTTAA
66 TGATATTCT-TAAATAAATAAATATCCTTATTTAT-AAAATAAAGATATATATAGATATATTTAA
39518 TATATTTT
129 TATATTTT
39526 CTTAAATTAT
Statistics
Matches: 123, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
148 9 0.07
149 96 0.78
150 8 0.07
151 10 0.08
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.47
Consensus pattern (151 bp):
TTAATATTTATTTATTTTTTAATATTAAGAAATAGGCTGTCTTAAAGCACCTAGAAGTCCTTTTC
TGATATTCTTAAATAAATAAATATCCTTATTTATAAAATAAAGATATATATAGATATATTTAATA
TATTTTTAGAGAAATGTTTTA
Found at i:47597 original size:63 final size:63
Alignment explanation
Indices: 47530--47686 Score: 163
Period size: 63 Copynumber: 2.4 Consensus size: 63
47520 AGGTATTTAT
* * * *
47530 TATCTATTTAACTTTGAATATTAAAA-GATAATTATATACTTTGAATATTTCAAATTAAAATAA
1 TATCTATTTAAATTTAAATAATAAAAGGAT-ATTAAATACTTTGAATATTTCAAATTAAAATAA
* ** *
47593 TATCTATTTAAATTTAAATAATAAAAGGATTTTAAATGTTTTGGATATTTCAAATTAAAAGATAA
1 TATCTATTTAAATTTAAATAATAAAAGGATATTAAATACTTTGAATATTTCAAATT-AAA-AT-A
47658 TA
63 -A
* *
47660 TTATCTGTTTAAATTTAAATATTAAAA
1 -TATCTATTTAAATTTAAATAATAAAA
47687 TATATTTAGT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
63 44 0.56
64 6 0.08
65 2 0.03
66 1 0.01
67 1 0.01
68 24 0.31
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.43
Consensus pattern (63 bp):
TATCTATTTAAATTTAAATAATAAAAGGATATTAAATACTTTGAATATTTCAAATTAAAATAA
Found at i:47606 original size:21 final size:22
Alignment explanation
Indices: 47575--47615 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
47565 ATACTTTGAA
47575 TATTTCAAATTAAAATAATATC
1 TATTTCAAATTAAAATAATATC
*
47597 TATTT-AAATTTAAATAATA
1 TATTTCAAATTAAAATAATA
47616 AAAGGATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (22 bp):
TATTTCAAATTAAAATAATATC
Found at i:47611 original size:27 final size:31
Alignment explanation
Indices: 47528--47686 Score: 78
Period size: 34 Copynumber: 4.9 Consensus size: 31
47518 ATAGGTATTT
* *
47528 ATTATCTATTTAACTTTGAATATTAAAAGATA
1 ATTATCTATTTAAATTTCAA-ATTAAAAGATA
*
47560 ATTATATACTTTGAATATTTCAAATT-AAA-ATA
1 ATTATCTA-TTT-AA-ATTTCAAATTAAAAGATA
47592 A-TATCTATTTAAATTT-AAATAATAAAAGGAT-
1 ATTATCTATTTAAATTTCAAAT--TAAAA-GATA
* * *
47623 TTTAAATGT-TTTGGATATTTCAAATTAAAAGATAA
1 ATT--ATCTATTT--AAATTTCAAATTAAAAGAT-A
* *
47658 TATTATCTGTTTAAATTTAAATATTAAAA
1 -ATTATCTATTTAAATTTCAA-ATTAAAA
47687 TATATTTAGT
Statistics
Matches: 97, Mismatches: 11, Indels: 36
0.67 0.08 0.25
Matches are distributed among these distances:
27 4 0.04
28 4 0.04
29 3 0.03
30 6 0.06
31 5 0.05
32 14 0.14
33 19 0.20
34 23 0.24
35 13 0.13
36 6 0.06
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.43
Consensus pattern (31 bp):
ATTATCTATTTAAATTTCAAATTAAAAGATA
Found at i:51821 original size:10 final size:10
Alignment explanation
Indices: 51806--51833 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
51796 TTATACTTTT
51806 AATAAATTAA
1 AATAAATTAA
51816 AATAAATTAA
1 AATAAATTAA
51826 AATAAATT
1 AATAAATT
51834 TAATCTTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AATAAATTAA
Found at i:52167 original size:18 final size:17
Alignment explanation
Indices: 52131--52172 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
52121 AATATTTTAT
52131 ATATATTAACTTAAAAA
1 ATATATTAACTTAAAAA
**
52148 ATTATATTAACTTATTAA
1 A-TATATTAACTTAAAAA
52166 ATATATT
1 ATATATT
52173 TTTTTAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (17 bp):
ATATATTAACTTAAAAA
Found at i:52180 original size:22 final size:24
Alignment explanation
Indices: 52136--52198 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 24
52126 TTTATATATA
* * *
52136 TTAACTTAAAAA-ATTATATTAAC
1 TTAATTTAAAAATATTTTTTTAAC
*
52159 TT-A-TTAAATATATTTTTTTAAC
1 TTAATTTAAAAATATTTTTTTAAC
52181 TTAATTTAAAAATATTTT
1 TTAATTTAAAAATATTTT
52199 ATTTTTATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
21 6 0.18
22 12 0.36
23 3 0.09
24 12 0.36
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAATTTAAAAATATTTTTTTAAC
Found at i:52203 original size:27 final size:26
Alignment explanation
Indices: 52164--52229 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
52154 TTAACTTATT
52164 AAATATATTTTTTTAACTTAATTTAA
1 AAATATATTTTTTTAACTTAATTTAA
* ** *
52190 AAATATTTTATTTTTATTTTCATTTAA
1 AAATATATT-TTTTTAACTTAATTTAA
*
52217 AAATATATATTTT
1 AAATATATTTTTT
52230 ATGTTAAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 12 0.36
27 21 0.64
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (26 bp):
AAATATATTTTTTTAACTTAATTTAA
Found at i:52401 original size:31 final size:31
Alignment explanation
Indices: 52366--52430 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
52356 TAGTCACATT
*
52366 TTAATTAAATAAAAACGAAGGTGATCATATC
1 TTAATTAAATAAAAACGAAAGTGATCATATC
52397 TTAATTAAATAAAAACGAAAGTGATCATATC
1 TTAATTAAATAAAAACGAAAGTGATCATATC
52428 TTA
1 TTA
52431 TGTTTTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (31 bp):
TTAATTAAATAAAAACGAAAGTGATCATATC
Found at i:53294 original size:60 final size:60
Alignment explanation
Indices: 53194--53365 Score: 186
Period size: 60 Copynumber: 2.9 Consensus size: 60
53184 GCATCATATG
* * * * * *
53194 TCTCCAAACTATTACTCTCATTATAAATTTGTCCTTAAACTTTTAAATATTTTAATTTTA
1 TCTCCAAACTATGAGTCTCATTTTAAATTAGTCCTCAAACTTTTAAATATTTTAATTTCA
* * *
53254 T-TCCCAAACTATGAGTCTCATTTTAAATTAGTCCTGAAACTTTTAAAAATTATAATTTCA
1 TCT-CCAAACTATGAGTCTCATTTTAAATTAGTCCTCAAACTTTTAAATATTTTAATTTCA
* * * * *
53314 TCTCTAAATTATGAGTCAC-TTTCTAAATTAGTCCCCAAACTTTTGAATATTT
1 TCTCCAAACTATGAGTCTCATTT-TAAATTAGTCCTCAAACTTTTAAATATTT
53366 CTATTTTTCC
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
59 4 0.04
60 88 0.95
61 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.05, T:0.44
Consensus pattern (60 bp):
TCTCCAAACTATGAGTCTCATTTTAAATTAGTCCTCAAACTTTTAAATATTTTAATTTCA
Found at i:56980 original size:9 final size:9
Alignment explanation
Indices: 56968--56994 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
56958 CTGCCTCTCC
56968 TGCTGCTGT
1 TGCTGCTGT
56977 TGCTGCTGT
1 TGCTGCTGT
56986 TGCTGCTGT
1 TGCTGCTGT
56995 CTTTCAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.00, C:0.22, G:0.33, T:0.44
Consensus pattern (9 bp):
TGCTGCTGT
Found at i:64439 original size:60 final size:60
Alignment explanation
Indices: 64259--64442 Score: 192
Period size: 60 Copynumber: 3.1 Consensus size: 60
64249 TCATATGACC
* * * * * * * * * *
64259 TAAACTATGATCCTCATTTTATATTGGTTCCTATATTTTTTAATATTCTAATTTCATCCT
1 TAAACTATGATACTCATTCTAAATTAGTCCCTAAAATTTTGAACATTCCAATTTCATCCT
* *
64319 CAAACTATGATACTCATTCTAAATTAGTCCTTAAAATTTTGAACATTCCAATTTCATCCT
1 TAAACTATGATACTCATTCTAAATTAGTCCCTAAAATTTTGAACATTCCAATTTCATCCT
* * * *
64379 TAAACTATG--ACTCGTGTTCTAAATTAGTCCCTAAACTTTTTAACCTTCCAATTTCATCCT
1 TAAACTATGATACTC--ATTCTAAATTAGTCCCTAAAATTTTGAACATTCCAATTTCATCCT
64439 TAAA
1 TAAA
64443 TTCATCCAGA
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
58 4 0.04
60 100 0.96
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.43
Consensus pattern (60 bp):
TAAACTATGATACTCATTCTAAATTAGTCCCTAAAATTTTGAACATTCCAATTTCATCCT
Found at i:69070 original size:20 final size:20
Alignment explanation
Indices: 69045--69096 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
69035 GTACTCGAGG
*
69045 GAGTATCGATACCCAGGGTA
1 GAGTATCGATACCCAAGGTA
*
69065 GAGTATCAATACCCAAGGTA
1 GAGTATCGATACCCAAGGTA
69085 GAGTATCGATAC
1 GAGTATCGATAC
69097 TCTCCATAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.21
Consensus pattern (20 bp):
GAGTATCGATACCCAAGGTA
Found at i:69196 original size:20 final size:22
Alignment explanation
Indices: 69152--69197 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
69142 TATAAATTTG
*
69152 GTATCGATACCCCAACACTAGA
1 GTATCGATACCCCAACACAAGA
69174 GTATCGATA-CCCAAC-CAAGA
1 GTATCGATACCCCAACACAAGA
69194 GTAT
1 GTAT
69198 AATATCAGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.35
21 6 0.26
22 9 0.39
ACGTcount: A:0.37, C:0.28, G:0.15, T:0.20
Consensus pattern (22 bp):
GTATCGATACCCCAACACAAGA
Found at i:69231 original size:20 final size:20
Alignment explanation
Indices: 69206--69274 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
69196 ATAATATCAG
69206 TATCGATACCTAGGGTTCAA
1 TATCGATACCTAGGGTTCAA
* ** **
69226 TATCGATACCAAAACG-TCGG
1 TATCGATACC-TAGGGTTCAA
69246 TATCGATACCTAGGGTTCAA
1 TATCGATACCTAGGGTTCAA
69266 TATCGATAC
1 TATCGATAC
69275 TGAAGGGTCA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
19 2 0.05
20 33 0.89
21 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.28
Consensus pattern (20 bp):
TATCGATACCTAGGGTTCAA
Found at i:69289 original size:20 final size:19
Alignment explanation
Indices: 69202--69297 Score: 61
Period size: 20 Copynumber: 4.8 Consensus size: 19
69192 GAGTATAATA
69202 TCAGTATCGATACCTAGGGT
1 TCAGTATCGATA-CTAGGGT
* * **
69222 TCAATATCGATACCAAAACG-
1 TCAGTATCGATA-C-TAGGGT
*
69242 TCGGTATCGATACCTAGGGT
1 TCAGTATCGATA-CTAGGGT
*
69262 TCAATATCGATACTGAAGGG-
1 TCAGTATCGATACT--AGGGT
*
69282 TCAGTATCAATACTAG
1 TCAGTATCGATACTAG
69298 CATAGTTTTG
Statistics
Matches: 59, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
18 2 0.03
19 4 0.07
20 47 0.80
21 6 0.10
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (19 bp):
TCAGTATCGATACTAGGGT
Found at i:70036 original size:9 final size:9
Alignment explanation
Indices: 70022--70046 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
70012 TCAGTATTGT
70022 ATTATTTGA
1 ATTATTTGA
70031 ATTATTTGA
1 ATTATTTGA
70040 ATTATTT
1 ATTATTT
70047 TGGGATCTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (9 bp):
ATTATTTGA
Found at i:84027 original size:56 final size:57
Alignment explanation
Indices: 83931--84047 Score: 164
Period size: 56 Copynumber: 2.1 Consensus size: 57
83921 GTATTTTAAA
* * *
83931 ATCTGAATTTTTTTCAATTAAATAGTTTTATATAACCCTAAAATTTTATTTATGTCG
1 ATCTGAATTTTCTTCAATTAAATAGTTATATACAACCCTAAAATTTTATTTATGTCG
** * *
83988 ATCTGAATTTTCTTC-ATTAGTTAGTTATATACCACCCTAAAATTTTATTTGTGTCG
1 ATCTGAATTTTCTTCAATTAAATAGTTATATACAACCCTAAAATTTTATTTATGTCG
84044 ATCT
1 ATCT
84048 CTATAAAATT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 39 0.74
57 14 0.26
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.48
Consensus pattern (57 bp):
ATCTGAATTTTCTTCAATTAAATAGTTATATACAACCCTAAAATTTTATTTATGTCG
Found at i:92179 original size:16 final size:15
Alignment explanation
Indices: 92147--92180 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
92137 CCTGTACTAA
*
92147 CTCATTTTTTTTCTT
1 CTCATTTTTTGTCTT
92162 CTCATTTTTTGTCATT
1 CTCATTTTTTGTC-TT
92178 CTC
1 CTC
92181 GCCTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.09, C:0.24, G:0.03, T:0.65
Consensus pattern (15 bp):
CTCATTTTTTGTCTT
Found at i:95028 original size:21 final size:21
Alignment explanation
Indices: 95002--95063 Score: 115
Period size: 21 Copynumber: 3.0 Consensus size: 21
94992 CCAATTGGCG
95002 TCATGTTAGTCTCTCTGCCTA
1 TCATGTTAGTCTCTCTGCCTA
95023 TCATGTTAGTCTCTCTGCCTA
1 TCATGTTAGTCTCTCTGCCTA
*
95044 TAATGTTAGTCTCTCTGCCT
1 TCATGTTAGTCTCTCTGCCT
95064 GTCTATATGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.15, C:0.27, G:0.15, T:0.44
Consensus pattern (21 bp):
TCATGTTAGTCTCTCTGCCTA
Found at i:103072 original size:16 final size:16
Alignment explanation
Indices: 103048--103079 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
103038 TATCGCCGAC
*
103048 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
103064 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
103080 TGTGAATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.25, G:0.06, T:0.34
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:104796 original size:61 final size:59
Alignment explanation
Indices: 104683--104978 Score: 201
Period size: 61 Copynumber: 4.9 Consensus size: 59
104673 TATGTTTAAT
* * * * * * * *
104683 CCTAACAAGTTAAGTATCTTTAAATTATGTTCTTATTTAATTATATTCATTAATAATTGAA
1 CCTAATAAGTTTAGT-TCTTTCAATTAGGTCCTTAATTAGTTATATTAATTAATAA-TGAA
* * * *
104744 TCTAATGAGTTTAGTTATTTGCAATTAGGTCCTTAATTAGTTATATTAATTAATAATCAA
1 CCTAATAAGTTTAGTTCTTT-CAATTAGGTCCTTAATTAGTTATATTAATTAATAATGAA
* ** * *
104804 GCCTAATAAGTTTATCTTCTTT-AAGTTACATCCTTAATTAGTTAAATTAATTAATAACTGAG
1 -CCTAATAAGTTTA-GTTCTTTCAA-TTAGGTCCTTAATTAGTTATATTAATTAATAA-TGAA
* **
104866 CCTAATAAGTTTAGCTTCTTTCAGTTAGG-CCTTTAATTAGTTA-ATTAA-T-A-ACGGAA
1 CCTAATAAGTTTAG-TTCTTTCAATTAGGTCC-TTAATTAGTTATATTAATTAATAATGAA
* * * * * * *
104922 CCTAATAAGCTGAGTTGCTTGT-AATTAGATCCTTATTTAGTAAAATTAATTAGTAAT
1 CCTAATAAGTTTAGTT-CTT-TCAATTAGGTCCTTAATTAGTTATATTAATTAATAAT
104979 TAAACTTAAG
Statistics
Matches: 183, Mismatches: 37, Indels: 31
0.73 0.15 0.12
Matches are distributed among these distances:
55 2 0.01
56 31 0.17
57 9 0.05
58 2 0.01
59 1 0.01
60 17 0.09
61 113 0.62
62 8 0.04
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (59 bp):
CCTAATAAGTTTAGTTCTTTCAATTAGGTCCTTAATTAGTTATATTAATTAATAATGAA
Found at i:106294 original size:30 final size:30
Alignment explanation
Indices: 106258--106319 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
106248 AGAAAATGAG
106258 TATACTCGTATACTGCACACTACTCTAGGA
1 TATACTCGTATACTGCACACTACTCTAGGA
106288 TATACTCGTATACTGCACACTACTCTAGGA
1 TATACTCGTATACTGCACACTACTCTAGGA
106318 TA
1 TA
106320 GACAAGTGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (30 bp):
TATACTCGTATACTGCACACTACTCTAGGA
Found at i:111731 original size:32 final size:32
Alignment explanation
Indices: 111690--111753 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
111680 AGTGAAACAA
*
111690 CTTAATGGTATCATTAGCATCTAACTAATAAC
1 CTTAATGGTAGCATTAGCATCTAACTAATAAC
111722 CTTAATGGTAGCATTAGCATCTAACTAATAAC
1 CTTAATGGTAGCATTAGCATCTAACTAATAAC
111754 ATTGTAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.33
Consensus pattern (32 bp):
CTTAATGGTAGCATTAGCATCTAACTAATAAC
Done.