genome.fa.s1020.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001020.1 Hibiscus syriacus cultivar Beakdansim tig00002033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73846

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230--267	16	2.2	17	86	9	51	23	0	10	65	1.23
960--1027	35	1.9	35	82	5	84	16	13	22	48	1.80
5815--5862	16	3.0	16	77	19	55	25	0	0	75	0.81
5805--5859	22	2.5	22	88	11	87	27	0	0	72	0.85
5805--5863	14	4.1	14	76	18	59	27	0	0	72	0.84
5807--5859	19	2.8	19	80	8	63	26	0	0	73	0.83
5908--5977	33	2.2	32	82	7	90	42	21	7	28	1.79
6274--6336	17	3.7	17	75	8	65	17	4	0	77	0.93
6303--6393	43	2.2	41	78	9	94	26	1	1	71	1.00
6318--6399	33	2.4	33	80	15	87	25	1	1	71	1.00
19118--19525	141	2.9	140	84	1	512	32	12	25	30	1.92
19405--19895	174	2.8	174	89	0	714	31	15	24	27	1.96
23070--23111	20	2.1	20	86	0	57	4	33	0	61	1.17
25288--26455	174	6.7	174	80	1	1166	31	15	25	28	1.95
25242--26447	522	2.3	521	81	3	1325	31	15	25	27	1.95
37418--37575	21	7.8	20	72	7	86	38	25	17	18	1.92
37542--37735	20	9.6	20	81	5	221	35	25	19	19	1.95
37542--37735	60	3.2	60	83	0	253	35	25	19	19	1.95
38119--38189	33	2.2	33	92	0	115	11	22	18	47	1.80
38262--38378	41	3.1	38	79	14	136	45	17	25	11	1.82
38269--38344	21	3.7	21	85	3	109	44	18	25	11	1.83
38329--38385	14	3.7	14	75	20	60	43	22	24	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38321--38401	33	2.5	33	93	0	135	45	23	22	8	1.79
38397--38480	19	4.7	19	81	14	115	10	22	21	45	1.82
38397--38502	52	2.0	52	98	0	203	10	23	19	46	1.81
40196--40583	93	4.2	93	99	0	767	21	12	19	46	1.83
41694--41729	14	2.6	14	95	0	63	33	0	22	44	1.53
41836--41942	19	5.8	19	86	11	152	44	16	23	14	1.85
41925--41951	14	1.9	14	100	0	54	37	22	25	14	1.93
41836--41951	52	2.2	53	92	7	193	43	18	24	14	1.87
41958--42110	33	4.5	33	74	16	159	13	22	17	45	1.84
41980--42195	19	12.4	19	76	18	247	14	20	18	46	1.83
41958--42167	52	4.0	52	99	0	411	14	22	17	46	1.84
41999--42209	33	6.2	33	76	13	232	13	21	18	46	1.83
44669--44715	24	2.0	24	87	8	69	38	21	14	25	1.92
45416--45584	20	8.4	20	83	3	198	20	19	25	34	1.96
45403--45607	40	5.1	39	83	7	207	20	19	24	35	1.96
52296--52341	19	2.2	20	85	14	67	45	0	0	54	0.99
56342--56379	18	2.1	19	85	5	51	36	13	2	47	1.56
58973--59027	2	27.5	2	100	0	110	49	0	0	50	1.00
59135--59218	23	3.7	23	91	0	132	27	27	26	19	1.99
63200--63237	12	2.8	13	88	11	51	55	0	7	36	1.29

Tables:   1

The End!