Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001021.1 Hibiscus syriacus cultivar Beakdansim tig00002034_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72844

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3940--3979
15
2.7
15
84
3
55
42
0
0
57
0.98
4148--4199
21
2.5
21
80
0
59
26
26
21
25
1.99
4483--4517
15
2.3
15
100
0
70
25
14
8
51
1.70
10164--10197
2
17.0
2
100
0
68
0
50
0
50
1.00
12763--12808
17
2.8
17
83
3
58
41
6
0
52
1.27
17949--18003
21
2.6
21
88
0
83
29
25
21
23
1.99
18017--18083
21
3.2
21
83
8
100
19
20
31
28
1.97
18211--18328
21
5.7
20
73
12
96
32
22
21
24
1.98
18368--18625
128
2.0
128
93
1
446
34
13
18
33
1.90
18647--18699
20
2.7
20
94
5
90
49
0
5
45
1.26
18664--18712
20
2.4
20
86
3
62
53
0
4
42
1.20
21385--21428
9
4.9
9
85
0
61
29
0
2
68
1.02
21375--21428
27
2.0
27
85
7
74
29
0
1
68
1.00
25456--25524
31
2.2
31
100
0
138
33
13
20
33
1.91
30417--30455
20
2.0
20
100
0
78
41
15
10
33
1.81
34089--34149
23
2.7
23
81
0
77
29
27
22
19
1.98
34168--34382
103
2.1
103
98
0
412
37
23
12
26
1.91
35331--35359
2
14.5
2
100
0
58
48
0
0
51
1.00
41531--41578
7
6.9
7
92
0
78
43
4
0
52
1.20
47701--48172
236
2.0
235
97
0
881
33
21
19
25
1.97
57248--57388
21
6.8
20
84
10
167
23
36
19
21
1.95
60096--60173
21
3.7
21
86
3
93
20
33
20
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60162--60235
30
2.4
30
95
2
130
22
29
21
25
1.99
60267--60341
20
3.8
20
89
0
105
20
34
18
26
1.95
71519--71634
21
5.6
21
66
14
62
35
25
18
21
1.95
71640--71834
20
9.6
20
74
2
165
39
23
17
19
1.92
71640--71836
40
4.9
41
85
1
272
39
23
17
19
1.92
72389--72467
20
3.9
21
86
5
94
51
17
18
11
1.75
72449--72546
14
6.3
14
71
21
70
45
21
22
10
1.81
72444--72587
33
4.5
33
93
2
231
45
22
21
10
1.81
72583--72712
19
7.1
19
75
15
112
13
21
20
44
1.86
72599--72628
13
2.3
13
94
0
51
10
20
23
46
1.80

Tables:   1

The End!