genome.fa.s1022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001022.1 Hibiscus syriacus cultivar Beakdansim tig00002035_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67531

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2775--2803	12	2.4	12	100	0	58	17	24	6	51	1.69
8351--8415	28	2.3	28	97	0	121	43	18	12	26	1.85
13524--14063	272	2.0	272	97	0	1008	38	14	10	37	1.79
14097--14175	39	2.0	39	100	0	158	22	20	17	39	1.92
15679--15719	21	1.9	22	90	5	66	34	4	7	53	1.50
15726--15773	25	1.9	25	95	0	87	45	0	8	45	1.33
15728--15784	25	2.3	25	84	0	69	49	0	7	43	1.29
15795--15833	18	2.1	19	85	4	53	61	7	0	30	1.24
16538--16615	31	2.5	31	91	0	129	34	10	26	28	1.89
19297--19365	31	2.2	31	84	5	86	40	10	18	30	1.84
19558--19638	39	2.1	39	92	0	135	41	14	14	28	1.86
19819--19905	29	3.0	29	83	6	104	35	5	2	56	1.36
19863--19916	24	2.3	23	83	6	63	35	5	0	59	1.21
20403--20445	23	2.0	23	86	9	63	67	4	9	18	1.36
33901--33950	15	3.1	15	78	15	55	60	4	34	2	1.27
33996--34045	21	2.4	22	76	10	59	74	6	18	2	1.12
37164--37197	17	2.0	17	100	0	68	64	0	5	29	1.17
37528--37645	21	5.7	21	79	5	98	38	21	19	21	1.94
37593--37821	20	11.4	20	84	5	221	37	25	17	18	1.93
38492--38546	24	2.3	24	83	0	65	27	14	20	38	1.91
38733--38757	12	2.1	12	100	0	50	72	0	28	0	0.86
41050--41234	33	5.2	34	73	17	155	46	17	21	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41050--41272	53	4.2	52	95	1	367	45	17	21	15	1.85
41050--41272	19	12.7	19	76	19	225	45	17	21	15	1.85
41036--41215	86	2.1	84	84	12	224	46	17	21	14	1.84
41103--41266	33	4.8	33	74	16	163	45	17	22	14	1.84
41243--41357	52	2.2	52	92	0	185	20	21	18	40	1.92
41262--41377	52	2.2	52	98	0	223	14	22	18	44	1.85
41281--41377	19	5.4	19	83	12	141	15	20	17	46	1.84
41484--41520	14	2.6	14	91	0	65	45	21	0	32	1.52
43450--43585	19	7.8	18	75	17	126	46	22	20	11	1.82
43508--43563	14	3.7	14	80	17	67	44	23	21	10	1.83
43451--43580	32	3.8	33	87	7	172	46	22	20	10	1.81
43597--43623	14	1.9	14	100	0	54	7	14	29	48	1.71
43581--43675	33	2.9	33	87	6	138	7	15	26	50	1.70
43581--43709	19	7.3	19	75	17	125	8	15	27	48	1.74
43754--44032	93	3.1	93	96	2	514	45	19	12	22	1.84
45730--45826	20	5.2	20	70	18	91	46	16	23	13	1.82
45777--45833	14	3.7	14	75	20	60	43	22	24	8	1.81
45728--45850	33	3.5	33	88	10	165	46	17	23	12	1.82
45873--45904	14	2.3	14	100	0	64	9	25	21	43	1.82
45888--45965	41	1.9	41	97	0	147	12	25	16	44	1.83
45889--45964	21	3.7	21	83	3	109	11	25	17	46	1.82
46044--46114	33	2.2	33	92	0	115	49	16	22	11	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46490--46682	20	9.6	20	84	5	237	19	18	26	35	1.95
47179--47225	21	2.2	21	96	0	85	25	25	21	27	1.99
47213--47310	42	2.3	42	92	3	144	34	23	20	21	1.96
47216--47316	21	4.8	20	75	15	89	35	22	20	20	1.96
48417--48458	21	2.0	21	90	0	66	52	0	47	0	1.00
51804--51853	21	2.4	21	96	0	91	40	8	18	34	1.79
54297--54332	18	2.0	19	89	10	58	77	0	8	13	0.98
59513--59584	32	2.2	32	97	0	135	20	6	23	48	1.74

Tables:   1

The End!