Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001023.1 Hibiscus syriacus cultivar Beakdansim tig00002038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140105

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13802--13877
38
2.0
38
92
0
125
28
14
6
50
1.68
18297--18324
14
2.0
14
100
0
56
28
7
28
35
1.84
18425--18737
147
2.1
148
96
1
574
27
16
21
34
1.95
28887--28935
24
2.0
24
100
0
98
22
16
12
48
1.79
37038--37149
42
2.7
42
92
0
179
18
17
17
45
1.86
37338--37398
22
2.8
23
82
7
65
47
0
0
52
1.00
37364--37457
29
3.4
29
70
16
85
47
1
1
50
1.15
37412--37519
30
3.5
30
77
18
107
43
0
2
52
1.22
37737--37777
14
2.8
15
77
7
57
31
17
7
43
1.76
37685--37754
20
3.5
20
96
0
131
35
14
10
40
1.79
37685--37763
40
2.0
40
89
0
122
35
15
8
40
1.78
43805--43872
19
3.5
19
71
13
50
42
1
0
55
1.08
44311--44364
11
5.0
11
74
17
51
44
7
3
44
1.49
44251--44454
81
2.5
81
100
0
408
39
7
14
38
1.74
44315--44357
20
2.2
20
87
8
61
44
6
4
44
1.52
44392--44445
11
5.0
11
74
17
51
44
7
3
44
1.49
44396--44438
20
2.2
20
87
8
61
44
6
4
44
1.52
50068--50121
8
6.8
8
85
6
74
64
1
0
33
1.04
50039--50126
33
2.7
31
76
11
88
70
1
0
28
0.95
50039--50122
8
10.4
8
72
16
57
69
1
0
29
0.97
50070--50123
17
3.2
17
81
5
74
68
1
0
29
1.00
50410--50562
8
18.8
8
67
22
70
32
1
3
63
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50450--50499
14
3.5
15
75
8
50
36
0
0
64
0.94
50516--50546
14
2.2
14
94
0
53
41
0
0
58
0.98
50874--51006
60
2.2
60
82
4
151
30
15
18
36
1.91
58439--58466
4
7.0
4
100
0
56
25
0
0
75
0.81
65134--65162
13
2.1
14
93
6
51
34
3
6
55
1.44
71152--71177
2
13.0
2
100
0
52
50
0
0
50
1.00
71374--71440
10
6.7
9
73
26
55
80
1
13
4
0.93
71405--71440
9
3.9
9
89
7
54
80
2
16
0
0.83
71373--71439
24
2.8
23
75
8
64
79
2
13
4
1.01
71374--71438
33
2.0
33
81
6
78
80
1
13
4
0.95
72835--72950
43
2.7
43
86
0
151
30
26
19
23
1.98
73162--73286
43
2.9
43
82
5
146
30
26
18
24
1.98
72712--73562
335
2.5
335
94
0
1468
32
24
19
23
1.97
73884--74030
36
4.1
36
87
2
215
27
18
13
40
1.88
73884--74030
71
2.0
73
88
2
217
27
18
13
40
1.88
74431--74463
9
3.8
9
92
8
59
42
0
0
57
0.98
76428--76456
13
2.1
14
93
6
51
34
3
6
55
1.44
90291--90324
18
1.9
18
88
5
52
58
11
11
17
1.62
92219--92332
60
1.9
59
85
5
158
32
23
4
39
1.75
94054--94556
187
2.7
185
88
4
737
39
12
21
26
1.89
113358--113382
12
2.1
12
100
0
50
16
36
16
32
1.90
123426--123464
16
2.4
16
87
8
53
28
2
28
41
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
130189--130231
21
2.0
21
81
0
50
27
27
25
18
1.98
133604--134901
105
12.4
105
92
2
2076
22
18
26
32
1.97

Tables:   1

The End!