Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001024.1 Hibiscus syriacus cultivar Beakdansim tig00002040_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57480

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2299--2333
2
17.5
2
100
0
70
48
0
0
51
1.00
5548--5623
36
2.1
36
85
0
98
39
18
13
28
1.88
7786--7868
30
2.7
31
80
10
91
40
1
3
54
1.26
8997--9029
5
6.6
5
100
0
66
0
39
0
60
0.97
11154--11252
49
2.0
50
80
9
114
47
2
0
50
1.12
11231--11299
32
2.3
30
82
12
79
44
0
4
50
1.21
11337--11385
23
2.2
21
78
7
53
40
2
2
55
1.23
11388--11558
29
5.8
29
72
17
104
51
1
0
46
1.12
11380--11432
20
2.7
20
75
16
56
49
1
0
49
1.12
11389--11452
28
2.3
25
84
12
65
50
1
0
48
1.10
11740--11815
37
2.0
38
97
2
145
52
18
14
14
1.74
12119--12146
14
2.0
14
100
0
56
57
0
0
42
0.99
22131--22179
16
3.2
16
69
16
50
55
0
20
24
1.44
25668--25698
16
2.0
16
93
6
55
51
0
0
48
1.00
26449--26484
19
1.9
19
88
5
56
58
5
13
22
1.56
29100--29174
35
2.1
35
90
0
114
52
16
4
28
1.61
34974--35007
17
2.0
17
94
0
59
55
0
23
20
1.43
37345--37684
169
2.0
170
98
0
655
38
22
10
27
1.87
42679--42748
34
2.1
32
89
5
104
21
31
15
31
1.95
43032--43073
21
2.0
21
90
0
66
26
26
21
26
1.99
43165--43209
19
2.4
19
80
0
63
40
8
6
44
1.62
49372--50045
334
2.0
335
98
1
1300
37
17
13
31
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54964--55007
14
3.2
14
87
3
54
25
9
2
63
1.35
55052--55085
17
2.0
17
88
0
50
17
0
5
76
0.98
55042--55103
30
2.0
31
81
9
74
22
3
6
67
1.28

Tables:   1

The End!