genome.fa.s1025.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001025.1 Hibiscus syriacus cultivar Beakdansim tig00002042_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  318342

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253--282	13	2.4	13	94	5	53	26	30	0	43	1.55
3270--3313	19	2.2	21	76	19	58	9	15	15	59	1.61
4653--4692	20	1.9	20	85	10	53	32	7	32	27	1.85
5584--5664	36	2.2	36	95	0	144	29	4	35	29	1.78
6006--6056	19	2.6	20	87	3	68	45	5	15	33	1.71
14231--14296	28	2.5	26	81	11	73	12	12	12	63	1.52
33689--33727	19	2.1	19	90	4	62	58	15	15	10	1.62
46590--46614	8	3.1	8	100	0	50	0	24	0	76	0.80
47332--47383	19	2.6	21	90	6	81	46	5	13	34	1.67
52558--52599	22	2.0	21	90	4	66	23	2	35	38	1.68
53971--54055	35	2.4	36	92	3	138	29	3	37	29	1.74
54262--54308	19	2.5	19	96	0	85	48	8	8	34	1.64
56988--57033	17	2.7	17	100	0	92	69	4	17	8	1.31
57005--57058	26	2.1	25	83	16	67	70	3	16	9	1.28
64308--64352	20	2.2	20	88	7	65	0	11	6	82	0.84
64308--64351	15	2.9	15	83	6	54	0	11	6	81	0.86
67048--67101	23	2.3	24	87	3	83	62	11	16	9	1.52
67048--67107	24	2.6	23	81	7	77	63	10	18	8	1.50
69855--69884	13	2.4	13	94	5	53	43	0	30	26	1.55
71378--71429	27	1.9	27	84	7	70	9	11	1	76	1.09
72038--72088	19	2.6	20	87	3	68	45	5	15	33	1.71
81523--81560	20	1.9	20	100	0	76	0	5	13	81	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98426--98473	13	3.8	12	75	8	51	35	35	2	27	1.69
98427--98489	25	2.5	25	97	0	117	33	36	3	26	1.73
115314--115382	33	2.1	33	83	5	86	31	1	36	30	1.67
115353--115454	36	2.9	36	91	1	161	26	5	36	31	1.80
122352--122408	22	2.6	23	86	5	66	33	26	19	21	1.97
125375--125426	21	2.6	21	87	6	72	32	11	7	48	1.68
126133--126195	20	3.3	19	83	14	69	77	3	19	0	0.90
126153--126199	11	4.3	11	81	10	60	78	0	21	0	0.75
126158--126192	8	4.6	8	86	13	56	77	0	22	0	0.78
126136--126194	14	4.3	13	82	18	75	77	1	20	0	0.85
126135--126199	28	2.3	29	80	20	84	78	1	20	0	0.83
126136--126199	19	3.2	19	81	18	76	78	1	20	0	0.84
126403--126437	17	2.0	18	88	5	54	14	22	0	62	1.31
129314--129365	21	2.6	21	90	6	81	32	13	7	46	1.72
130712--130763	19	2.6	21	90	6	81	46	7	11	34	1.69
131647--131706	30	2.0	31	90	9	97	51	8	10	30	1.64
131655--131693	20	2.0	20	85	10	53	53	7	10	28	1.62
134441--134480	19	2.0	20	85	4	55	62	0	15	22	1.32
135821--135880	30	2.0	31	86	3	86	53	10	8	28	1.63
151796--151828	15	2.2	15	89	10	50	72	0	9	18	1.10
153825--153889	28	2.4	27	80	12	71	10	10	12	66	1.46
153876--153905	11	2.6	12	94	5	53	0	13	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153876--153905	6	5.2	6	92	8	53	0	13	0	86	0.57
158005--158051	23	2.0	24	83	4	60	68	12	10	8	1.40
160799--160828	13	2.4	13	94	5	53	43	0	30	26	1.55
165669--165720	19	2.6	21	90	6	81	46	5	11	36	1.64
169875--169946	21	3.6	20	90	5	110	47	4	13	34	1.63
176537--176710	91	1.9	91	89	2	269	30	21	25	21	1.99
185506--185534	15	2.0	15	93	6	51	0	20	3	75	0.94
185527--185579	24	2.2	24	86	0	79	7	15	18	58	1.60
186359--186532	91	1.9	91	87	0	258	28	21	27	22	1.99
190446--190506	31	1.9	31	83	9	79	19	16	0	63	1.30
190723--190778	19	2.8	20	80	20	64	76	5	14	3	1.09
193177--193228	22	2.4	22	100	0	104	36	15	21	26	1.93
194674--194718	11	4.1	11	82	5	56	71	4	8	15	1.28
194674--194715	22	1.9	22	90	9	68	69	4	9	16	1.33
204343--204444	48	2.2	45	81	11	111	34	0	13	50	1.48
213606--213635	13	2.4	13	94	5	53	26	30	0	43	1.55
219290--219348	26	2.2	29	79	14	72	8	15	13	62	1.53
221939--221984	23	2.0	23	86	0	65	36	13	23	26	1.91
226765--227406	323	2.0	317	95	4	1148	37	14	19	27	1.91
227386--227437	19	2.6	21	90	6	81	46	7	13	32	1.72
230496--230535	19	2.0	20	90	4	64	65	0	15	20	1.28
230948--230999	19	2.6	21	84	9	72	48	7	11	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233500--233539	20	1.9	22	85	10	57	40	12	30	17	1.86
238187--238220	17	1.9	18	94	5	61	14	23	0	61	1.33
241315--241363	25	1.9	25	83	4	62	44	6	14	34	1.70
243663--243721	21	2.8	22	79	7	77	1	20	3	74	1.05
244416--244465	17	2.6	19	84	12	59	48	6	14	32	1.67
246245--246298	28	1.9	28	100	0	108	25	18	12	42	1.86
247831--247886	25	2.3	24	87	6	85	71	7	7	14	1.29
250574--250627	28	1.9	28	100	0	108	25	18	12	42	1.86
264013--264042	13	2.4	13	94	5	53	26	30	0	43	1.55
272422--272478	24	2.4	24	73	2	62	8	14	10	66	1.44
275180--275209	13	2.4	13	94	5	53	26	30	0	43	1.55
285905--285934	13	2.4	13	94	5	53	26	30	0	43	1.55
294304--294408	36	2.9	35	91	1	156	28	4	36	30	1.78
295823--295859	9	3.9	10	89	10	60	0	18	0	81	0.70
295824--295856	15	2.2	15	89	10	50	0	18	0	81	0.68
295823--295859	19	2.0	18	94	5	65	0	18	0	81	0.70
295842--295901	23	2.6	23	83	0	84	8	15	11	65	1.47
306596--306642	19	2.7	18	78	12	53	63	10	14	10	1.51
309387--309416	13	2.4	13	94	5	53	43	0	30	26	1.55
313370--313409	20	1.9	22	85	10	57	40	12	30	17	1.86

Tables:   1

The End!