genome.fa.s1026.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001026.1 Hibiscus syriacus cultivar Beakdansim tig00002045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80510

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6840--6934	6	15.8	6	98	0	172	16	13	33	35	1.88
10326--10359	17	2.0	17	100	0	68	41	11	11	35	1.78
33269--33319	23	2.2	23	82	0	57	45	1	1	50	1.24
33307--33399	19	5.0	18	69	8	62	48	1	2	48	1.20
33325--33405	28	2.9	30	72	18	75	51	1	1	45	1.16
33451--33484	17	1.9	18	88	5	52	55	0	2	41	1.15
34298--34390	21	4.5	21	78	4	100	39	18	24	17	1.91
34298--34390	41	2.3	41	100	0	186	39	18	24	17	1.91
34376--34426	20	2.5	20	77	3	57	45	19	15	19	1.86
34421--34451	16	1.9	16	93	0	53	29	29	19	22	1.98
35048--35232	19	10.1	19	73	14	138	12	22	20	44	1.85
35048--35137	39	2.3	38	90	5	137	11	20	21	47	1.80
35120--35207	33	2.6	33	92	1	140	13	25	22	38	1.91
35186--35232	20	2.3	20	79	13	60	12	25	14	46	1.80
36890--36935	18	2.6	18	100	0	92	36	21	0	41	1.54
37251--37373	42	2.9	42	80	2	122	22	36	17	22	1.95
37307--37373	21	3.2	21	66	6	55	23	35	20	19	1.95
38732--38767	14	2.6	14	95	0	63	30	0	25	44	1.54
38891--38939	19	2.5	19	80	3	53	16	20	24	38	1.92
41208--41232	12	2.1	12	100	0	50	0	28	0	72	0.86
41407--41460	24	2.2	24	90	0	81	38	20	16	24	1.92
42519--42569	20	2.5	20	93	0	84	35	25	21	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42519--42576	20	2.9	20	87	5	82	39	22	20	17	1.92
42595--42662	19	3.8	19	85	12	92	13	20	17	48	1.80
42623--42695	19	4.1	19	74	16	66	16	20	19	43	1.88
44668--44734	19	3.5	19	83	4	89	37	23	23	14	1.93
44723--44780	14	3.9	14	79	16	71	48	25	17	8	1.75
44707--44785	32	2.4	33	95	2	142	46	24	18	10	1.80
44814--44871	14	3.9	14	72	16	53	12	15	22	50	1.77
44797--44887	32	2.8	33	89	3	148	13	17	20	48	1.81
44872--44926	20	2.8	19	83	8	65	16	23	23	36	1.94
45399--45443	18	2.5	18	88	0	72	13	15	44	26	1.83
46811--46854	22	2.0	22	95	0	79	18	15	45	20	1.85
47042--47135	20	4.7	20	80	2	89	23	18	24	34	1.96
47022--47136	20	5.7	20	78	5	88	23	17	23	35	1.95
47064--47198	41	3.3	41	81	4	130	20	20	20	38	1.94
47125--47217	20	4.6	20	78	4	96	18	23	18	39	1.92
47125--47217	41	2.3	41	98	0	177	18	23	18	39	1.92
59708--59794	33	2.6	33	85	1	120	42	32	10	14	1.80
59784--59853	30	2.3	31	85	7	90	38	22	11	27	1.89
59835--59897	26	2.3	27	81	8	74	55	19	4	20	1.61
65928--65975	23	2.1	23	88	0	69	35	12	18	33	1.89
66357--66408	23	2.3	22	90	6	77	44	19	1	34	1.62
66367--66429	23	2.7	23	90	0	90	38	19	6	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67652--67717	33	2.0	33	87	0	96	24	45	1	28	1.62
70021--70063	20	2.3	18	85	14	61	20	16	11	51	1.75
70026--70072	20	2.4	19	82	10	67	19	17	10	53	1.72
70194--70239	20	2.3	20	85	10	67	19	17	8	54	1.68
73073--73101	2	14.5	2	100	0	58	51	0	0	48	1.00
74658--74776	20	5.8	20	85	3	130	46	14	21	18	1.84
74658--74763	41	2.6	41	82	5	124	47	12	21	18	1.81
74671--74790	20	5.8	20	83	9	109	48	13	18	20	1.81
75156--75247	20	4.6	20	75	14	91	22	16	23	36	1.94
78151--78239	44	2.0	44	100	0	178	22	24	15	37	1.93
78734--78785	21	2.5	21	81	3	61	38	19	25	17	1.93
78734--78947	41	5.3	40	73	12	168	35	18	21	24	1.96
78734--78949	20	10.6	20	76	7	177	34	18	21	25	1.96
78734--78953	61	3.6	61	76	6	205	35	18	21	25	1.96
78716--78907	102	1.9	102	83	6	255	32	18	21	27	1.97
79466--79531	19	3.4	19	85	2	87	46	25	16	10	1.79
79527--79619	19	5.1	19	72	15	79	12	24	19	43	1.86
79532--79594	33	1.9	33	90	0	99	11	25	22	41	1.86

Tables:   1

The End!