genome.fa.s1027.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001027.1 Hibiscus syriacus cultivar Beakdansim tig00002046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79076

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6464--6520	30	1.9	30	92	7	98	24	33	10	31	1.89
17178--17624	227	2.0	227	94	1	790	44	8	7	39	1.62
20202--20267	33	2.0	33	84	0	87	28	1	43	25	1.63
22048--22095	19	2.6	19	90	3	71	31	2	10	56	1.45
22214--23614	198	7.1	199	95	2	2502	36	15	16	31	1.90
24088--24155	21	3.4	18	69	21	55	36	8	35	19	1.83
24088--24185	6	16.3	6	80	0	70	36	7	34	21	1.81
24103--24189	3	29.0	3	77	0	84	35	5	34	24	1.79
24091--24181	42	2.2	42	91	0	146	35	7	35	21	1.83
24088--24185	18	5.4	18	78	0	88	36	7	34	21	1.81
25649--25992	184	1.9	184	93	0	589	35	14	16	33	1.89
28562--28624	23	2.8	23	85	2	83	34	6	20	38	1.78
28562--28633	23	3.2	23	80	9	76	33	5	20	40	1.76
28988--29059	23	3.2	24	82	11	89	33	4	20	41	1.72
29327--29377	25	2.0	25	92	0	84	33	7	19	39	1.81
29626--29662	18	2.1	18	89	0	56	32	5	10	51	1.60
29618--29664	24	2.0	24	86	0	67	34	4	14	46	1.64
29920--30003	39	2.2	39	95	0	150	48	20	14	16	1.80
30403--30466	23	2.8	23	87	0	92	35	6	20	37	1.78
30403--30475	23	3.2	23	82	7	85	34	5	20	39	1.76
33838--33867	15	2.0	15	93	0	51	56	0	6	36	1.26
39905--39943	18	2.2	19	90	9	64	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41367--41448	7	10.7	7	73	21	51	75	1	3	19	1.02
41325--41409	23	3.4	23	70	16	62	72	1	4	21	1.09
41361--41448	30	2.9	28	73	25	72	76	1	3	19	1.00
41466--41516	20	2.5	19	81	12	57	76	1	5	15	1.07
41533--41604	23	3.0	24	69	23	62	72	5	8	13	1.27
41511--41604	47	1.9	49	87	6	138	70	5	9	14	1.32
42701--42782	39	2.1	39	90	4	130	43	9	4	41	1.59
42753--42806	26	2.2	24	83	12	65	46	11	3	38	1.57
43282--43323	22	1.9	22	85	0	57	64	0	9	26	1.24
43720--43756	2	18.5	2	100	0	74	51	0	0	48	1.00
52376--52579	5	40.8	5	98	0	300	34	0	5	59	1.21
62663--62693	10	3.1	10	100	0	62	9	19	19	51	1.74
65182--65243	20	3.3	20	66	25	53	41	14	8	35	1.75
65176--65252	36	2.1	37	87	2	111	44	12	6	36	1.69
76210--76650	218	2.0	219	99	0	866	31	25	12	29	1.93

Tables:   1

The End!