genome.fa.s1028.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001028.1 Hibiscus syriacus cultivar Beakdansim tig00002047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78945

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3507--3553	14	3.2	15	88	11	71	57	6	12	23	1.58
10212--10251	13	3.0	13	85	3	53	55	2	40	2	1.27
13209--13256	23	2.1	23	88	0	69	35	6	18	39	1.76
13517--13564	25	2.0	23	84	11	62	20	6	10	62	1.49
13645--14458	182	4.5	182	93	1	1278	27	15	12	43	1.84
14332--14903	112	5.1	111	89	2	815	25	14	13	46	1.81
14332--14903	223	2.6	223	90	1	855	25	14	13	46	1.81
23635--23710	31	2.5	31	82	0	89	40	11	9	38	1.74
26561--26598	20	1.9	20	94	0	67	31	15	7	44	1.75
28839--28879	20	2.0	20	85	0	55	41	7	14	36	1.74
33141--33191	23	2.2	23	96	0	93	56	17	9	15	1.65
36590--36630	20	2.0	20	100	0	82	36	9	19	34	1.85
37844--37889	18	2.6	18	96	0	83	17	50	21	10	1.77
39230--39265	18	2.0	18	88	0	54	52	0	16	30	1.44
40430--40499	12	5.8	12	76	6	61	17	14	18	50	1.79
40393--40497	48	2.2	48	83	6	124	19	17	16	47	1.83
40431--40503	24	3.0	24	87	0	110	19	12	17	50	1.77
40664--40692	2	14.5	2	100	0	58	48	0	0	51	1.00
42268--42327	27	2.2	27	96	0	111	23	50	6	20	1.71
42268--42348	27	2.9	27	87	5	72	27	49	4	18	1.68
42367--42434	33	2.1	33	83	5	84	20	44	7	27	1.78
44201--44230	2	15.0	2	92	0	51	0	0	46	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44230--44258	2	14.5	2	100	0	58	48	0	51	0	1.00
52332--52424	38	2.5	37	89	5	134	46	3	13	36	1.60
70015--70064	11	4.2	12	72	12	50	56	2	0	42	1.11
70493--70543	12	4.3	12	75	9	52	31	0	3	64	1.11
70532--70593	26	2.5	26	89	5	92	43	0	1	54	1.09
70532--70599	24	2.8	25	86	8	79	44	0	1	54	1.09
70505--70659	62	2.5	62	90	4	231	40	0	3	56	1.15
70556--70638	38	2.2	37	82	8	105	42	0	2	55	1.13
70654--70715	19	3.3	19	78	15	58	37	1	0	61	1.06
70922--70969	20	2.3	22	79	13	57	60	2	2	35	1.20
71158--71217	31	1.9	31	89	0	93	41	11	6	40	1.68
74053--74098	16	2.9	16	83	9	58	32	0	0	67	0.91

Tables:   1

The End!