Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001032.1 Hibiscus syriacus cultivar Beakdansim tig00002054_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50485

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4927--4980
27
1.9
28
85
7
74
61
1
1
35
1.18
5941--6120
51
3.6
50
81
9
210
47
18
12
21
1.81
6566--6659
49
1.9
48
89
2
143
50
14
10
24
1.75
10955--10984
11
2.7
11
100
0
60
16
6
20
56
1.62
11028--11085
26
2.3
26
88
8
86
25
0
1
72
0.94
11061--11106
16
2.9
16
84
12
67
28
0
2
69
1.00
11367--11412
13
3.6
13
77
11
51
73
0
0
26
0.83
12138--12184
24
1.9
26
83
12
64
27
4
0
68
1.08
12232--12281
27
1.9
27
88
8
77
26
4
0
70
1.05
12232--12280
24
2.0
24
84
11
64
24
4
0
71
1.03
18992--19038
23
2.0
23
95
0
85
21
25
23
29
1.99
18996--19054
23
2.6
23
83
5
75
20
27
22
30
1.98
20253--20286
17
2.1
16
88
5
50
14
8
0
76
1.01
25377--25419
20
2.1
21
87
8
63
18
13
0
67
1.23
25376--25425
20
2.5
20
75
15
59
18
18
0
64
1.30
26701--26755
27
2.0
27
100
0
110
25
41
18
14
1.88
26704--26761
27
2.1
27
93
0
98
25
44
15
13
1.83
29268--29301
17
2.1
16
88
5
50
14
8
0
76
1.01
30223--30264
21
2.0
22
85
4
59
21
21
30
26
1.98
36723--36749
14
1.9
14
100
0
54
37
22
18
22
1.95
37198--37385
99
1.9
99
88
0
286
37
22
18
21
1.94
37228--37780
280
2.0
273
90
3
858
34
24
18
22
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37501--37717
106
2.0
106
84
1
283
33
25
19
21
1.97
38874--38932
25
2.3
25
85
11
75
22
5
1
71
1.15
38953--39024
28
2.5
28
80
6
74
23
6
1
68
1.22
39046--39082
2
18.0
2
94
5
65
48
2
0
48
1.15
40617--40648
10
3.2
10
100
0
64
40
9
0
50
1.35
49548--49623
19
3.8
19
71
19
66
55
3
0
40
1.18
49557--49642
41
2.1
41
93
2
147
52
5
1
40
1.33

Tables:   1

The End!