genome.fa.s1033.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001033.1 Hibiscus syriacus cultivar Beakdansim tig00002055_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61415

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3774--3807	11	3.1	11	95	0	59	38	23	17	20	1.93
3807--3884	22	3.4	22	78	13	93	33	19	38	8	1.83
3829--4016	60	3.1	60	91	3	308	34	21	33	10	1.88
4050--4132	26	3.1	26	90	10	139	14	31	28	25	1.95
4030--4135	29	3.8	29	87	9	157	15	31	31	22	1.95
4185--4258	37	2.0	37	97	2	141	16	45	13	24	1.83
4263--4297	18	1.9	18	100	0	70	28	17	25	28	1.97
4383--4428	23	2.0	23	100	0	92	47	4	39	8	1.54
4383--4443	23	2.6	23	86	5	59	50	6	36	6	1.54
4431--4489	21	2.9	21	92	2	93	61	0	37	1	1.07
4685--4776	46	2.0	48	87	8	136	42	0	11	45	1.41
7029--7087	26	2.3	24	78	16	64	40	3	8	47	1.51
7901--7943	8	5.4	8	78	10	52	60	13	0	25	1.34
8572--8651	29	2.8	29	98	0	151	16	30	33	20	1.94
20501--20600	35	2.8	35	96	3	182	32	8	21	39	1.82
22953--22983	2	15.5	2	100	0	62	51	0	0	48	1.00
23197--23330	24	5.6	24	86	1	162	41	19	11	27	1.87
23194--23330	72	1.9	72	87	3	204	40	19	11	27	1.86
23190--23342	72	2.1	72	84	4	202	41	18	11	28	1.84
31226--31273	24	2.0	24	95	0	87	31	20	12	35	1.90
40995--41027	15	2.3	15	89	5	50	84	0	15	0	0.61
43518--43571	18	3.0	18	91	0	72	14	38	18	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43814--43855	22	1.9	22	85	9	59	33	2	7	57	1.39
44789--44820	13	2.4	14	94	5	57	71	0	0	28	0.86
56600--56644	23	2.0	23	90	0	72	35	11	4	48	1.59

Tables:   1

The End!