Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001034.1 Hibiscus syriacus cultivar Beakdansim tig00002056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94551

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4010--5006
81
12.2
80
75
7
900
29
24
20
25
1.99
4010--4993
165
6.0
164
84
3
1101
29
24
20
25
1.99
3968--4993
330
3.1
324
84
4
1213
30
24
20
25
1.99
6343--6405
6
10.0
6
77
16
56
19
3
1
76
1.01
6343--6467
16
7.4
16
66
20
58
20
5
1
72
1.14
6499--6550
25
2.1
25
88
0
77
11
5
1
80
0.96
6553--6584
3
10.7
3
100
0
64
31
0
0
68
0.90
7009--7058
23
2.2
23
92
0
82
50
8
4
38
1.51
19002--19026
2
12.5
2
100
0
50
52
0
0
48
1.00
30952--30992
19
2.1
20
86
4
57
48
0
2
48
1.14
37741--37783
21
2.0
21
90
0
68
32
27
23
16
1.96
37811--37848
20
1.9
20
88
0
58
23
34
31
10
1.89
37840--37870
15
2.1
15
100
0
62
41
32
0
25
1.56
38343--38560
103
2.1
103
91
0
355
24
13
23
38
1.91
38577--38628
23
2.3
23
89
0
77
21
28
26
23
1.99
38587--38639
23
2.3
23
83
0
61
22
26
22
28
1.99
39353--39423
29
2.4
29
85
0
88
14
26
38
21
1.91
39757--39782
2
13.0
2
100
0
52
50
0
0
50
1.00
43788--43829
12
3.6
12
80
6
59
73
0
2
23
0.94
43784--43832
23
2.1
23
100
0
98
73
0
6
20
1.04
43797--43850
11
4.6
11
77
9
54
72
0
9
18
1.11
43784--43839
23
2.4
23
93
0
85
73
0
7
19
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45728--45771
23
1.9
23
85
0
61
40
9
13
36
1.76
45688--45849
87
1.9
86
87
6
238
42
11
12
33
1.79
45844--46571
199
3.7
199
85
4
927
30
15
14
39
1.87
48562--48602
22
1.9
22
95
5
75
48
14
7
29
1.71
48634--49183
200
2.7
203
86
5
739
31
16
13
38
1.88
48624--49183
203
2.8
197
84
6
757
32
16
13
37
1.88
49232--49528
159
1.9
159
94
0
531
32
18
14
34
1.91
50070--50118
19
2.6
19
90
0
71
53
8
2
36
1.43
53111--53145
16
2.1
18
89
10
56
42
5
11
40
1.65
53764--53802
18
2.2
18
90
0
60
7
33
0
58
1.26
54472--54527
24
2.4
23
80
8
69
50
7
0
42
1.30
56474--57294
182
4.5
182
87
2
1067
27
15
13
43
1.85
59957--60018
23
2.7
23
76
2
61
27
12
14
45
1.82
59976--60030
24
2.3
23
84
3
65
25
10
14
49
1.76
60024--60100
23
3.3
23
81
0
82
29
15
16
37
1.90
60503--60537
17
2.1
17
88
0
52
48
2
8
40
1.49
64187--64336
74
2.0
74
96
0
273
40
8
12
38
1.74
69756--69783
2
14.0
2
100
0
56
50
0
0
50
1.00
71055--71079
6
4.2
6
100
0
50
16
0
0
84
0.63
92738--92814
38
2.0
39
92
2
129
25
16
14
42
1.86

Tables:   1

The End!