Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001035.1 Hibiscus syriacus cultivar Beakdansim tig00002058_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76286

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4400--4436
19
1.9
19
88
0
56
24
35
29
10
1.89
4445--4478
8
4.4
8
85
7
52
79
0
20
0
0.73
4442--4478
11
3.3
11
85
7
56
81
0
18
0
0.70
4446--4480
15
2.3
15
95
0
61
77
0
22
0
0.78
5530--5574
21
2.1
21
87
0
63
15
24
28
31
1.96
12073--12139
29
2.3
29
97
0
125
25
10
20
43
1.84
13219--13270
21
2.4
22
87
6
70
38
5
3
51
1.44
15666--15694
14
2.0
15
93
6
51
37
0
0
62
0.96
16159--16195
16
2.3
16
95
0
65
27
27
16
29
1.97
16385--16430
17
2.7
17
96
0
83
6
28
4
60
1.40
22447--22545
33
3.0
33
94
1
164
45
15
7
32
1.73
22540--22581
21
2.0
21
95
0
75
47
7
14
30
1.71
24644--24701
17
3.5
17
71
13
50
77
0
1
20
0.86
24644--24699
16
3.7
15
77
20
55
76
0
1
21
0.87
26438--26577
71
2.0
71
82
2
174
25
22
22
30
1.99
26698--27495
106
7.5
106
94
0
1382
23
18
24
33
1.97
30701--30745
20
2.3
20
96
3
83
68
11
11
8
1.39
33573--33617
24
1.9
23
82
13
56
71
0
2
26
0.98
33569--33642
29
2.6
29
81
8
80
71
1
2
24
1.07
34154--34189
16
2.2
16
100
0
72
22
30
19
27
1.98
34418--34866
106
4.2
106
90
1
659
23
19
24
32
1.98
34419--35071
212
3.2
206
87
6
898
22
19
25
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34775--34954
88
2.0
88
97
0
342
22
20
24
33
1.97
34811--34960
43
3.4
43
65
18
112
21
20
24
34
1.97
34671--35040
194
1.9
194
94
0
659
22
18
25
33
1.97
35998--36069
26
2.7
26
76
8
74
73
1
1
23
0.99
36034--36065
9
3.4
9
95
4
55
81
0
0
18
0.70
46970--47271
149
2.0
149
96
0
559
34
20
17
28
1.95
48660--48704
21
2.1
21
87
0
63
15
24
28
31
1.96
51784--52085
149
2.0
149
96
0
550
34
19
16
28
1.94
53477--53520
21
2.1
21
86
0
61
15
25
27
31
1.96
63352--63413
30
2.1
29
82
11
74
61
1
1
35
1.16
64375--64568
50
3.9
50
84
4
230
46
18
13
21
1.83
64846--64877
2
16.0
2
100
0
64
50
0
0
50
1.00
65062--65159
51
1.9
50
89
2
151
47
14
12
25
1.78
65256--65280
12
2.1
12
100
0
50
84
0
0
16
0.63
69454--69482
10
2.7
11
89
10
51
17
6
20
55
1.65
69525--69575
23
2.1
25
92
7
88
27
0
0
72
0.85
69528--69566
12
3.3
12
78
7
53
28
0
0
71
0.86
69524--69580
23
2.5
22
86
11
78
28
0
1
70
0.98
69558--69600
15
2.9
15
83
13
61
30
0
2
67
1.03
69803--69845
13
3.2
13
83
3
50
25
0
2
72
0.97
69854--69893
16
2.5
17
88
8
57
75
0
0
25
0.81
70628--70674
24
1.9
26
83
12
64
27
4
0
68
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70722--70771
27
1.9
27
88
8
77
26
4
0
70
1.05
70722--70770
24
2.0
24
84
11
64
24
4
0
71
1.03

Tables:   1

The End!