genome.fa.s1037.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001037.1 Hibiscus syriacus cultivar Beakdansim tig00002061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99515

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1424--1461	12	3.1	12	88	3	58	78	7	10	2	1.04
2784--3026	30	7.9	30	70	12	138	29	16	14	40	1.87
2824--2867	16	2.8	16	82	3	63	27	13	13	45	1.81
2795--2965	66	2.7	63	79	8	170	29	15	14	40	1.87
2843--2966	66	1.9	66	85	6	171	30	15	14	39	1.87
12262--12366	40	2.6	40	87	0	147	21	31	20	26	1.98
12345--12450	43	2.5	43	85	0	149	24	31	21	22	1.98
12743--12803	3	20.7	3	96	3	115	34	0	0	65	0.93
13292--13330	18	2.2	18	100	0	78	38	46	5	10	1.60
14295--14490	30	6.6	30	77	2	189	18	16	8	55	1.66
14295--14497	59	3.4	58	80	4	201	18	16	8	56	1.64
20067--20124	20	2.7	20	81	10	62	31	20	20	27	1.98
20601--20645	21	2.1	22	87	4	65	51	4	17	26	1.65
24574--24607	2	17.0	2	100	0	68	50	0	0	50	1.00
24642--24978	54	6.2	54	87	3	423	32	19	20	28	1.97
24636--24975	107	3.1	107	86	2	432	32	19	20	28	1.97
24636--24978	161	2.1	162	85	5	462	32	19	20	27	1.97
26466--26807	54	6.3	54	90	1	515	32	20	21	26	1.97
35358--35446	43	2.1	43	91	2	144	10	8	42	38	1.70
36117--36162	18	2.7	18	86	6	60	30	28	6	34	1.82
37365--37423	23	2.6	23	97	0	109	30	27	25	16	1.97
38985--39022	20	1.9	20	94	0	67	26	23	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39216--39265	25	2.0	25	100	0	100	28	28	4	40	1.74
40646--40690	19	2.4	19	88	0	72	31	26	6	35	1.82
42109--42169	23	2.7	23	89	0	95	29	26	24	19	1.99
43722--43779	20	2.7	20	81	10	62	27	22	18	31	1.97
46229--47512	638	2.0	642	96	1	2355	30	12	14	41	1.83
46874--48149	714	1.8	696	92	3	2178	31	12	14	41	1.84
49240--49281	20	2.1	20	90	0	66	30	7	2	59	1.37
49252--49318	19	3.5	19	87	2	89	32	1	2	62	1.19
49291--49349	24	2.4	24	81	16	68	32	0	3	64	1.10
49699--49823	42	3.0	42	80	8	139	48	0	1	50	1.10
49766--49824	21	2.9	20	73	11	57	45	0	1	52	1.10
49822--49875	22	2.4	24	81	12	69	62	1	0	35	1.06
49848--49880	14	2.3	15	89	5	50	69	0	0	30	0.88
52208--52282	37	2.0	37	82	10	91	50	2	1	45	1.24
53597--53683	45	1.9	45	95	0	156	51	0	16	32	1.44
54838--54933	50	1.9	50	91	0	156	25	33	13	28	1.93
58568--58633	25	2.6	24	80	7	69	25	1	4	68	1.18
62409--62456	13	3.7	13	78	10	62	72	6	20	0	1.05
62398--62462	26	2.5	26	83	11	89	72	7	20	0	1.09
62395--62435	18	2.2	19	86	4	57	70	4	24	0	1.06
63910--64526	36	16.9	36	88	2	770	27	21	14	36	1.92
64043--64179	21	7.4	21	63	26	85	27	24	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64778--64872	42	2.3	42	78	5	104	27	22	22	28	1.99
65062--65170	36	3.0	36	83	1	128	26	20	14	38	1.91
65154--65234	29	2.8	28	86	7	99	35	20	11	32	1.88
65583--65756	91	1.9	91	97	0	330	37	14	23	23	1.92
65825--65887	20	3.2	20	70	20	60	42	11	19	26	1.84
66108--66206	52	1.9	52	87	0	144	35	16	19	29	1.93
84068--84102	18	1.9	18	88	0	52	17	37	22	22	1.94
93460--93508	20	2.6	19	80	6	55	36	14	6	42	1.70

Tables:   1

The End!