Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001038.1 Hibiscus syriacus cultivar Beakdansim tig00002064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91529

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5525--5559
16
2.2
16
94
0
61
34
25
8
31
1.86
6193--6218
7
3.7
7
100
0
52
11
11
15
61
1.57
11820--11857
2
19.0
2
100
0
76
50
0
0
50
1.00
21707--21733
2
13.5
2
100
0
54
51
0
0
48
1.00
21977--22010
17
1.9
18
94
5
61
58
0
0
41
0.98
30333--30482
75
2.0
75
97
0
282
44
13
7
34
1.71
34685--34852
3
55.7
3
92
1
282
33
2
0
63
1.10
36967--37010
18
2.5
17
85
7
61
27
0
2
70
0.99
47588--47656
1
69.0
1
82
0
75
89
0
10
0
0.47
47588--47656
26
2.7
25
88
4
93
89
0
10
0
0.47
47588--47658
15
4.7
15
86
8
99
88
0
11
0
0.51
48594--49172
52
11.1
52
97
0
1043
24
14
23
36
1.93
49114--49320
83
2.5
83
97
0
387
28
13
21
36
1.91
49872--50398
119
4.5
119
94
2
901
36
14
20
27
1.93
50554--50746
3
64.7
3
91
1
316
34
2
0
62
1.09
60242--60283
22
1.9
22
85
9
59
59
7
4
28
1.44
61794--61859
32
2.0
33
85
8
91
39
27
9
24
1.85
76845--76972
60
2.1
60
84
5
161
45
0
14
39
1.50
77744--77974
20
11.5
20
81
3
196
37
23
18
20
1.94
77785--77974
40
4.7
40
87
1
229
37
22
18
20
1.94
78844--78904
19
3.2
19
92
0
104
45
19
21
13
1.84
78916--78953
14
2.7
14
87
0
58
13
23
21
42
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78945--79016
20
3.5
20
88
5
101
11
16
19
52
1.73
79553--79766
20
10.6
20
77
6
216
20
18
24
36
1.94
79550--79847
40
7.4
40
77
9
241
19
18
24
37
1.93
79775--79847
20
3.7
20
94
3
121
13
19
23
43
1.86
79552--79847
81
3.7
81
79
6
314
19
18
24
38
1.93
79555--79847
162
1.8
162
82
3
383
19
18
24
38
1.93
79855--79912
19
2.9
20
79
7
64
20
17
18
43
1.89
82934--82964
12
2.6
12
100
0
62
6
16
61
16
1.54
84885--84909
2
12.5
2
100
0
50
0
52
0
48
1.00
90109--90144
5
7.2
5
87
0
54
75
0
5
19
1.00

Tables:   1

The End!