genome.fa.s104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000104.1 Hibiscus syriacus cultivar Beakdansim tig00000188_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63075

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2134--2160	14	1.9	14	100	0	54	55	22	7	14	1.64
4266--4322	13	4.2	13	78	12	60	47	15	3	33	1.63
5222--5413	83	2.3	83	88	0	267	33	20	20	25	1.97
5243--5375	41	3.2	41	72	10	135	34	19	21	24	1.96
5273--5413	42	3.4	41	75	10	142	34	21	21	21	1.97
6132--6171	21	1.9	21	100	0	80	32	15	15	37	1.88
7403--7428	12	2.2	12	100	0	52	26	42	0	30	1.56
11058--11143	21	4.1	21	81	3	93	38	18	40	2	1.64
11066--11158	21	4.4	21	78	8	82	39	18	39	2	1.63
11496--11726	43	5.3	43	73	14	138	31	20	20	27	1.98
11582--11764	43	4.3	43	74	15	137	26	22	20	31	1.98
13148--13223	19	3.8	19	73	19	66	57	19	1	21	1.47
13109--13201	21	4.7	20	70	15	59	53	19	3	23	1.59
13099--13202	39	2.7	37	80	10	93	52	22	2	22	1.60
13133--13221	40	2.3	38	79	9	90	56	21	2	20	1.53
13363--13423	21	3.0	20	80	17	72	50	24	0	24	1.49
13364--13409	21	2.1	21	96	4	83	58	21	0	19	1.39
13347--13423	40	1.9	41	83	2	102	51	24	0	23	1.48
13208--13661	179	2.6	175	93	5	787	51	26	1	21	1.56
13526--13599	19	3.9	19	82	5	78	48	25	1	24	1.59
22644--22706	2	31.5	2	100	0	126	50	0	0	49	1.00
22830--22901	20	3.6	20	73	12	67	31	29	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22870--22915	20	2.3	20	92	0	74	36	23	19	19	1.95
23191--23228	20	1.9	20	100	0	76	15	21	26	36	1.93
23183--23237	20	2.8	20	82	0	74	20	23	21	34	1.97
29662--29731	26	2.7	26	72	12	72	31	14	5	48	1.67
30633--30685	2	26.5	2	96	0	97	50	0	0	49	1.00
41940--42015	38	2.0	38	100	0	152	31	15	21	31	1.94
42070--42108	17	2.3	17	81	0	51	41	2	0	56	1.13
42185--42288	37	2.8	37	82	0	127	40	15	11	32	1.83
42706--42738	15	2.2	15	89	10	50	27	0	0	72	0.85
42771--42803	10	3.7	9	88	11	50	42	0	0	57	0.98
42981--43042	27	2.2	30	85	8	85	24	1	0	74	0.91
42961--43014	22	2.5	21	82	11	65	25	3	0	70	1.04
43124--43169	18	2.4	19	82	7	58	17	8	0	73	1.07
44339--44376	19	2.0	20	89	5	60	7	23	0	68	1.16
48630--48677	22	2.2	22	96	0	87	33	25	16	25	1.96
49481--50755	106	12.0	106	91	0	1994	34	25	17	23	1.96
52247--52336	24	3.7	24	72	11	67	26	4	1	67	1.16

Tables:   1

The End!