genome.fa.s1041.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001041.1 Hibiscus syriacus cultivar Beakdansim tig00002069_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59828

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1458--1488	13	2.3	14	94	5	55	22	32	0	45	1.53
6239--6326	39	2.3	39	88	11	128	43	2	37	17	1.61
24758--24799	22	1.9	22	90	0	66	47	0	33	19	1.49
24755--24805	26	2.0	25	88	3	75	45	0	35	19	1.51
35548--35581	16	2.1	17	88	5	52	35	0	0	64	0.94
41954--41999	24	1.9	24	86	8	67	54	0	8	36	1.32
42657--42732	2	38.0	2	100	0	152	50	0	0	50	1.00
43038--43159	54	2.2	56	83	12	155	50	4	6	37	1.50
43037--43124	2	45.5	2	75	18	71	51	2	5	40	1.38
43040--43246	14	14.7	14	66	18	67	48	4	8	38	1.53
43370--43406	2	18.5	2	100	0	74	48	0	0	51	1.00
43512--43595	2	42.0	2	77	13	84	50	2	3	44	1.32
43700--43834	40	3.4	40	65	15	100	42	15	5	35	1.71
43699--43861	79	2.1	79	91	2	265	43	15	6	34	1.71
43926--44115	2	96.5	2	75	14	164	49	2	4	43	1.37
44101--45685	4	398.0	4	98	0	3112	49	24	0	25	1.50
49092--49130	13	2.9	13	85	14	53	51	25	0	23	1.49
49102--49130	14	2.1	14	93	6	51	55	20	0	24	1.44
58426--58459	14	2.5	14	90	4	52	47	29	0	23	1.52
58667--58797	2	65.5	2	83	11	171	51	1	2	44	1.23
58666--58814	28	5.1	29	84	10	121	52	2	3	42	1.29
59074--59119	19	2.5	19	82	3	58	36	4	17	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59160--59203	21	2.2	20	83	4	52	29	2	20	47	1.62
59161--59217	25	2.3	25	78	9	62	33	1	21	43	1.63
59207--59251	16	2.6	17	86	13	58	53	2	6	37	1.40
59212--59307	18	5.4	18	70	16	58	48	3	8	39	1.49
59234--59306	12	5.7	12	71	12	56	46	2	9	41	1.51
59416--59488	2	37.0	2	93	2	121	49	1	1	47	1.18
59582--59663	2	42.0	2	80	13	91	50	2	1	46	1.22
59582--59679	24	4.2	24	78	13	91	48	3	2	45	1.29
59581--59681	14	8.1	12	76	14	73	48	2	1	46	1.28

Tables:   1

The End!