genome.fa.s1043.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001043.1 Hibiscus syriacus cultivar Beakdansim tig00002071_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144579

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451--512	28	2.2	29	82	8	74	41	3	4	50	1.40
577--633	19	2.8	20	76	7	62	14	3	1	80	0.92
1244--1282	20	1.9	21	89	5	62	43	12	20	23	1.86
1393--1558	71	2.3	73	80	4	176	41	11	14	32	1.81
4541--4617	24	3.6	22	75	20	67	29	19	25	24	1.98
6162--6224	23	2.7	23	85	0	90	15	23	25	34	1.95
7102--7216	31	3.7	32	88	2	162	31	22	20	26	1.98
11869--11915	11	4.4	11	81	13	53	34	2	0	63	1.06
11871--11915	20	2.2	21	84	4	56	35	2	0	62	1.08
12459--12502	20	2.3	19	81	11	54	34	0	0	65	0.93
15238--15289	25	2.3	22	81	18	63	19	11	19	50	1.77
15247--15294	25	1.9	25	100	0	96	16	12	27	43	1.84
15247--15302	25	2.2	25	93	0	94	17	14	25	42	1.87
16166--16203	20	1.9	20	88	0	58	31	21	23	23	1.98
16576--16613	20	2.0	20	89	5	60	50	7	10	31	1.66
17589--17643	23	2.4	23	93	0	101	16	29	25	29	1.97
19269--19316	15	3.2	15	90	0	78	8	66	16	8	1.42
22328--22450	50	2.5	50	82	0	156	15	34	28	21	1.94
22736--23060	111	2.9	111	96	0	589	35	7	12	44	1.71
24459--24578	51	2.4	50	80	8	118	27	28	27	16	1.97
31482--31554	37	2.0	37	91	0	119	24	13	21	39	1.90
31863--32272	202	2.0	202	97	0	777	27	23	9	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33658--33684	3	9.0	3	100	0	54	0	33	0	66	0.92
34208--34248	21	2.0	21	85	9	57	7	9	9	73	1.26
34613--34773	41	3.9	41	85	0	205	27	19	18	34	1.95
36305--36385	38	2.1	37	90	4	126	28	13	9	48	1.74
41813--41856	9	4.8	9	80	5	52	47	0	2	50	1.13
42960--43269	43	7.3	42	77	6	241	24	22	18	33	1.97
42960--43269	85	3.7	84	78	5	277	24	22	18	33	1.97
46432--46479	21	2.4	18	86	13	60	52	2	0	45	1.12
49670--49713	19	2.2	20	88	4	63	56	4	2	36	1.32
49670--49721	20	2.6	19	84	6	59	59	3	1	34	1.27
52241--52313	16	4.4	17	80	11	80	19	10	42	27	1.84
52307--52401	49	1.9	49	84	0	127	15	28	36	18	1.92
52977--53140	60	2.7	59	72	13	147	41	5	20	32	1.75
56015--56083	29	2.4	29	82	0	102	31	14	26	27	1.95
56060--56100	18	2.3	18	86	0	55	31	17	24	26	1.97
65603--65637	17	2.1	17	94	0	61	82	2	0	14	0.77
65596--65637	6	7.2	6	91	5	59	83	4	0	11	0.79
65609--65634	11	2.4	11	100	0	52	84	0	0	15	0.62
68249--68296	21	2.3	21	100	0	96	39	6	14	39	1.71
71126--71166	18	2.2	19	86	4	57	68	4	4	21	1.28
73362--73569	45	4.7	45	85	3	201	27	21	11	38	1.88
73441--73685	79	2.8	90	80	9	237	28	22	11	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73443--73606	45	3.7	44	87	3	204	26	24	11	37	1.90
73537--73688	79	1.9	79	90	0	241	30	22	10	36	1.88
74102--74151	19	2.5	20	87	12	68	24	32	12	32	1.91
74193--74246	22	2.7	20	77	16	58	22	24	18	35	1.96
78617--78660	19	2.2	20	88	4	63	56	4	2	36	1.32
78617--78668	20	2.6	19	84	6	59	59	3	1	34	1.27
80182--80289	20	5.4	20	85	0	144	44	24	12	18	1.85
81360--81536	68	2.6	68	88	9	240	28	2	16	52	1.56
81612--81660	20	2.5	20	75	0	62	28	22	26	22	1.99
81708--81758	20	2.6	19	84	6	66	21	17	19	41	1.91
85294--85340	18	2.6	18	86	3	67	31	12	23	31	1.92
85313--85403	20	4.6	19	75	15	69	25	12	23	39	1.89
85353--85420	20	3.3	20	89	2	100	17	13	26	42	1.86
85472--85525	20	2.7	21	74	8	58	27	12	29	29	1.94
89836--89879	19	2.4	18	80	3	52	31	15	29	22	1.95
91685--91710	13	2.0	13	100	0	52	0	0	38	61	0.96
94817--94849	17	1.9	17	88	11	50	48	0	15	36	1.45
101061--101101	21	2.0	21	85	9	57	31	19	4	43	1.72
107343--107385	21	2.0	21	86	4	59	25	32	23	18	1.97
107460--107490	2	15.5	2	100	0	62	48	0	0	51	1.00
111911--112195	75	3.8	74	87	3	365	29	17	13	39	1.88
111944--112155	36	5.7	37	64	15	98	28	16	14	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111909--112242	150	2.2	152	80	7	398	30	16	14	37	1.90
112198--112599	39	10.3	39	86	2	502	29	17	17	35	1.93
112936--113310	132	2.8	132	87	5	490	31	19	18	30	1.96
116647--116696	21	2.4	21	100	0	100	36	8	14	42	1.74
124990--125049	23	2.6	23	91	0	93	46	15	16	21	1.83
132197--132248	20	2.6	19	77	14	52	23	9	28	38	1.86
132536--132585	2	25.0	2	91	0	82	46	0	0	54	1.00
140331--140378	24	2.0	25	83	4	62	22	10	12	54	1.68

Tables:   1

The End!