Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001044.1 Hibiscus syriacus cultivar Beakdansim tig00002072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43848

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2732--2794
10
6.9
9
84
13
76
77
0
12
9
0.98
2734--2783
8
5.8
8
90
9
64
76
0
12
12
1.04
2744--2792
16
2.9
18
82
14
68
79
0
12
8
0.93
2734--2793
26
2.2
27
88
5
86
78
0
11
10
0.97
2770--2799
10
3.0
10
95
0
51
86
0
10
3
0.67
4360--4717
113
3.2
113
97
0
682
36
16
19
27
1.93
4624--4790
73
2.3
73
93
0
280
33
16
16
32
1.92
4511--4845
186
1.8
186
93
0
580
34
16
19
30
1.94
5181--5246
3
22.7
3
77
11
66
39
0
0
60
0.97
5190--5246
20
2.8
20
83
2
78
40
0
0
59
0.97
6595--6624
3
10.0
3
92
0
51
33
3
0
63
1.11
6706--6928
116
1.9
114
82
4
279
39
8
7
44
1.63
6889--6951
33
1.9
32
87
3
90
49
0
0
50
1.00
10303--10501
110
1.8
110
88
2
310
22
19
23
35
1.96
11628--11670
19
2.3
19
88
8
61
0
16
2
81
0.79
22150--22193
23
1.9
23
86
9
63
68
4
13
13
1.36
22364--22407
3
15.3
3
83
9
56
68
0
2
29
1.02
23428--23494
30
2.2
30
83
0
80
19
29
17
32
1.95
24869--24909
17
2.4
17
100
0
82
41
4
7
46
1.53
29338--29388
2
25.5
2
100
0
102
49
0
0
50
1.00
34222--34256
18
1.9
18
88
0
52
28
17
0
54
1.43
39038--39106
10
7.1
10
76
12
72
18
23
30
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39038--39108
19
3.7
19
88
5
90
18
25
29
26
1.98
39102--39176
17
4.4
17
94
0
132
18
44
22
14
1.86
39166--39195
7
4.4
7
91
8
53
16
30
30
23
1.96
39166--39191
13
2.0
13
100
0
52
15
30
30
23
1.95
40660--40694
18
1.9
18
88
0
52
28
17
0
54
1.43
41989--42013
13
1.9
13
100
0
50
20
24
40
16
1.91
41994--42034
18
2.3
18
95
0
73
12
21
48
17
1.79
41988--42052
31
2.1
31
94
0
112
15
20
47
16
1.82
42012--42048
13
2.8
13
91
0
65
13
21
48
16
1.80

Tables:   1

The End!