genome.fa.s1048.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001048.1 Hibiscus syriacus cultivar Beakdansim tig00002078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99501

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1579--1623	3	15.7	3	86	9	58	35	4	0	60	1.17
3478--3516	19	2.1	19	90	0	60	48	2	0	48	1.15
8264--8310	24	2.0	24	86	0	67	40	25	21	12	1.89
9707--9763	28	2.0	28	89	0	87	33	5	17	43	1.71
10538--10581	2	22.0	2	100	0	88	50	0	0	50	1.00
13413--13460	21	2.6	17	77	22	60	45	0	2	52	1.12
13558--13584	14	1.9	14	100	0	54	37	7	14	40	1.74
15755--15892	3	44.0	3	85	12	172	32	1	0	65	1.07
17350--17483	30	4.5	30	74	14	116	20	15	8	55	1.67
17376--17511	30	4.6	30	71	15	86	18	16	10	55	1.69
23711--23949	36	6.7	36	94	0	392	30	15	15	38	1.88
24236--24333	28	3.4	28	83	9	108	25	16	12	45	1.82
24798--24850	18	3.0	18	83	10	65	35	0	0	64	0.94
24798--24838	20	2.0	21	86	13	59	31	0	0	68	0.90
29259--29307	21	2.4	21	86	10	66	51	2	2	44	1.24
29291--29373	25	3.3	26	80	10	100	51	0	3	44	1.18
29291--29365	21	3.1	23	83	14	82	50	0	4	45	1.20
29622--29740	39	3.1	39	79	12	138	43	0	18	36	1.56
31755--31836	27	3.1	26	75	6	92	43	14	2	39	1.59
31932--31979	25	1.9	25	91	0	78	35	6	4	54	1.45
33139--33178	20	2.0	20	100	0	80	40	15	5	40	1.68
34041--34077	20	1.9	19	89	10	58	45	10	24	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34590--34623	15	2.3	15	94	0	59	26	29	26	17	1.98
34718--35372	228	2.9	225	77	5	622	31	21	23	23	1.99
39720--39764	22	2.0	22	100	0	90	55	8	13	22	1.65
40115--40175	20	3.2	20	68	13	65	19	21	6	52	1.68
40088--40176	37	2.4	37	98	0	169	17	20	7	53	1.68
44262--44515	102	2.5	101	76	3	240	32	14	21	31	1.93
45141--46047	173	5.3	172	75	7	425	29	15	17	36	1.91
45124--46138	171	5.9	173	77	4	862	29	16	17	36	1.92
45124--46109	344	2.9	338	77	7	925	29	16	17	36	1.92
47814--47887	23	3.6	19	72	15	67	27	24	28	20	1.99
48631--48849	103	2.1	103	92	3	370	26	12	23	37	1.90
48874--48931	23	2.5	23	88	0	80	24	24	24	27	2.00
54184--54242	23	2.6	23	86	0	82	22	23	25	28	1.99
56420--56445	8	3.2	8	100	0	52	38	11	11	38	1.78
59644--59869	103	2.2	103	91	1	373	26	12	23	37	1.90
59879--59945	23	2.9	23	81	0	71	22	20	26	29	1.99
61877--61902	13	2.0	13	100	0	52	61	15	0	23	1.33
76231--76269	20	2.0	20	89	0	60	33	10	23	33	1.88
88237--88275	20	2.0	20	94	0	69	35	20	10	33	1.86
88243--88280	10	3.8	10	80	13	51	34	18	10	36	1.85

Tables:   1

The End!