genome.fa.s1049.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001049.1 Hibiscus syriacus cultivar Beakdansim tig00002079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123034

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2928--2959	14	2.1	16	88	11	50	25	18	25	31	1.98
3362--3525	82	2.0	81	90	1	256	27	17	18	35	1.94
3703--3753	27	1.9	27	88	4	77	50	3	25	19	1.64
3697--3758	26	2.4	25	81	7	79	48	4	24	22	1.70
7017--7046	2	15.0	2	100	0	60	0	0	50	50	1.00
6882--7210	164	2.0	164	97	2	626	31	8	24	36	1.85
7181--7242	2	31.0	2	100	0	124	0	0	50	50	1.00
7194--7724	167	3.0	182	91	8	957	20	9	27	43	1.82
7376--7410	2	17.5	2	100	0	70	0	0	51	48	1.00
7543--7591	2	24.5	2	100	0	98	0	0	51	48	1.00
14649--14815	60	2.8	59	75	8	158	35	18	4	41	1.70
14955--15100	60	2.4	60	77	0	166	44	5	19	30	1.73
21433--21546	59	1.9	59	96	0	210	18	27	14	39	1.90
22795--22920	60	2.1	60	85	2	164	30	6	15	46	1.71
27114--27158	21	2.1	21	95	0	81	37	20	4	37	1.73
27121--27163	21	2.2	20	87	8	61	41	18	4	34	1.71
36090--36120	15	2.1	15	100	0	62	67	6	0	25	1.14
36390--36476	31	2.9	29	77	9	95	26	12	10	50	1.72
38186--38257	33	2.2	33	100	0	144	31	13	20	33	1.92
40639--40767	60	2.2	60	94	0	222	33	20	3	41	1.71
40639--40731	31	3.1	31	64	17	77	33	22	4	39	1.74
41096--41147	20	2.6	20	96	0	95	38	26	13	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41203--41391	60	3.1	60	82	0	243	35	25	19	19	1.95
41203--41391	20	9.4	20	81	5	211	35	25	19	19	1.95
41776--41846	33	2.2	33	92	0	115	11	22	18	47	1.80
41979--42023	19	2.4	19	92	0	72	46	26	17	8	1.78
42024--42137	33	3.5	33	91	1	185	10	23	21	44	1.83
42019--42115	19	5.7	18	70	21	75	11	23	22	42	1.86
42073--42129	14	3.7	14	79	20	69	8	26	24	40	1.84
43832--44303	184	2.5	186	98	0	921	22	12	18	46	1.83
43832--44303	93	5.1	93	98	1	921	22	12	18	46	1.83
44347--44474	19	7.3	19	73	17	116	45	28	17	8	1.78
44383--44474	33	2.8	32	90	6	141	45	28	18	7	1.76
44470--44569	19	5.8	18	74	21	99	11	21	21	47	1.81
44492--44548	14	3.7	14	77	20	60	10	21	22	45	1.82
44475--44567	33	2.8	33	95	0	168	10	20	21	47	1.80
44470--44586	19	6.7	19	70	19	85	10	20	23	46	1.81
44539--44602	19	3.4	18	80	8	67	10	17	28	43	1.82
46526--46561	14	2.6	14	95	0	63	33	0	22	44	1.53
46668--46769	19	5.6	19	84	13	151	44	17	23	14	1.86
46776--47099	33	9.5	33	76	14	154	14	20	17	46	1.83
46776--47071	52	5.6	52	88	3	228	14	21	16	46	1.83
46836--46890	14	3.6	14	78	21	65	10	20	20	49	1.78
46776--47013	85	2.8	85	87	6	333	15	21	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46850--47071	104	2.1	105	94	0	392	14	21	16	47	1.82
49380--49404	12	2.1	12	100	0	50	0	28	0	72	0.86
49579--49625	24	2.0	24	87	8	69	38	21	14	25	1.92
50308--50676	20	18.5	20	86	4	458	20	18	26	34	1.96
53157--53228	31	2.4	31	92	2	119	37	1	9	51	1.44
56901--56981	35	2.3	32	77	20	83	25	8	9	55	1.61
61553--61600	18	2.7	18	86	0	78	22	29	12	35	1.91
62256--62298	18	2.4	18	88	3	61	23	58	16	2	1.50
62973--63030	29	2.0	29	100	0	116	24	13	20	41	1.89
63300--63432	32	4.2	32	78	0	122	28	12	16	42	1.85
63318--63434	32	3.7	32	77	0	135	29	12	14	43	1.82
63774--63866	32	2.9	32	83	1	96	43	17	9	30	1.81
67204--67257	10	5.8	10	77	20	55	5	29	0	64	1.16
67200--67256	26	2.2	26	87	6	80	5	28	0	66	1.13
67944--68007	29	2.2	29	100	0	128	29	12	18	39	1.88
84059--84091	14	2.4	14	94	0	57	39	39	3	18	1.66
95066--95092	2	13.5	2	100	0	54	51	0	0	48	1.00
98665--98963	148	2.0	150	91	1	485	38	10	9	42	1.71
100430--100470	19	2.2	19	100	0	82	26	24	0	48	1.51
100524--100555	2	16.0	2	100	0	64	50	0	0	50	1.00
102370--102470	24	4.2	24	82	2	114	27	15	17	38	1.91
104150--104211	28	2.2	28	80	5	72	37	20	16	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106635--106691	30	1.9	30	92	0	96	40	7	7	45	1.58
106717--106765	22	2.2	22	85	3	62	55	12	0	32	1.37
106724--107016	77	3.9	77	85	12	410	51	15	0	33	1.43
106767--106834	21	3.1	21	71	19	66	51	16	0	32	1.45
106812--107150	32	11.8	32	68	26	190	52	13	0	33	1.41
106945--106984	21	1.9	21	94	0	71	52	15	0	32	1.43
106996--107038	22	2.0	22	95	0	77	51	11	0	37	1.39
106998--107046	22	2.2	22	85	3	62	55	12	0	32	1.37
107051--107125	22	3.2	22	75	14	69	54	16	0	29	1.42
107001--107304	80	3.8	80	95	0	513	53	14	0	32	1.41
107001--107304	159	1.9	159	93	1	520	53	14	0	32	1.41
107240--107476	52	4.7	52	84	12	300	52	12	0	35	1.42
107338--107376	20	1.9	20	94	5	69	51	12	0	35	1.40
107364--107452	30	3.3	29	71	28	88	55	11	1	32	1.43
107388--107488	22	4.6	21	71	12	87	51	9	0	38	1.35
107442--107590	15	9.7	15	80	14	162	51	2	0	46	1.12
107475--107590	45	2.7	45	92	5	186	50	0	0	50	1.00
107536--107590	12	4.2	12	80	15	56	54	0	0	45	0.99
108155--108403	120	2.0	125	90	6	400	37	6	6	50	1.53
109722--109764	2	21.5	2	85	0	59	0	2	44	53	1.13
113261--113307	14	3.2	15	88	11	71	57	6	12	23	1.58
119991--120030	13	3.0	13	85	3	53	55	2	40	2	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122953--123000	23	2.1	23	88	0	69	35	6	18	39	1.76

Tables:   1

The End!