genome.fa.s105.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000105.1 Hibiscus syriacus cultivar Beakdansim tig00000189_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103267

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035--1140	46	2.3	47	90	6	162	58	12	12	16	1.63
6015--6048	17	2.0	17	88	0	50	52	32	0	14	1.42
7997--8055	19	2.9	20	82	7	66	16	22	35	25	1.95
11838--11877	21	1.9	21	85	10	55	35	10	2	52	1.48
14489--14553	32	2.0	32	87	0	94	43	0	27	29	1.56
18164--18221	24	2.4	24	97	0	107	18	10	25	44	1.82
18699--18751	17	3.1	18	83	8	74	5	32	0	62	1.19
19993--20045	20	2.7	20	93	0	88	45	24	16	13	1.83
20011--20278	61	4.5	61	75	11	168	38	23	19	19	1.93
20054--20278	20	11.4	20	79	9	196	38	23	19	19	1.94
20054--20276	40	5.7	40	82	9	255	38	22	19	19	1.93
20093--20236	74	1.9	75	90	4	229	40	22	18	17	1.91
20031--20284	20	12.9	19	71	14	110	37	23	19	20	1.94
21087--21133	24	2.0	24	95	0	85	21	21	21	36	1.96
23680--23831	19	8.7	19	70	21	127	43	19	23	13	1.86
23647--23740	33	2.8	34	81	3	109	40	22	22	14	1.90
23695--23722	14	2.0	14	100	0	56	42	21	21	14	1.88
23696--23729	14	2.4	14	90	0	50	44	20	23	11	1.84
23680--23792	53	2.2	52	88	1	172	44	19	22	14	1.86
23734--23827	33	2.8	33	98	0	179	43	19	24	12	1.85
23640--23831	86	2.2	85	86	1	267	41	20	23	14	1.89
23827--23889	19	3.3	19	93	0	99	17	15	22	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24028--24064	14	2.6	14	86	0	56	43	21	0	35	1.53
25412--25478	21	3.2	21	66	19	50	17	20	37	23	1.94
26930--27036	33	3.2	33	90	1	151	42	19	22	14	1.88
26958--27018	14	4.0	14	75	19	59	44	18	21	16	1.87
26972--27090	53	2.3	52	82	1	157	43	18	22	15	1.87
27030--27123	33	2.8	33	98	0	179	43	19	24	12	1.85
27140--27212	33	2.2	33	90	0	110	15	19	19	46	1.84
27154--27212	19	3.4	19	68	22	56	16	20	16	45	1.85
27319--27355	14	2.6	14	91	0	65	45	21	0	32	1.52
28702--28768	21	3.2	21	66	19	50	17	20	37	23	1.94
30786--30867	20	4.2	20	75	9	87	46	19	21	12	1.82
30833--30924	33	2.8	33	93	0	157	45	22	20	10	1.82
30784--30929	19	8.1	19	69	17	114	45	20	21	11	1.83
30936--31046	20	5.8	20	78	13	101	10	19	19	49	1.77
31612--31822	20	10.4	21	75	11	208	19	17	24	38	1.93
31612--31883	40	6.8	40	82	5	278	19	17	24	38	1.93
31612--31883	81	3.4	80	83	3	296	19	17	24	38	1.93
31831--31883	20	2.7	20	91	5	81	13	18	24	43	1.86
31933--31986	20	2.7	19	75	8	63	16	18	31	33	1.93
38674--38747	19	3.8	19	75	13	71	40	12	17	29	1.86
42159--42369	36	5.9	36	97	0	395	41	17	16	24	1.89
48679--48889	36	5.9	36	93	0	332	44	15	13	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49386--49411	12	2.2	12	100	0	52	61	7	0	30	1.24
49783--49815	17	2.1	16	88	11	50	54	3	0	42	1.15
51322--52308	488	2.0	489	98	0	1924	36	17	17	28	1.93
52368--52476	42	2.5	43	75	10	105	59	13	0	25	1.40
59435--59474	14	2.7	15	80	7	55	50	0	15	35	1.44
59713--59843	31	4.3	29	67	17	70	45	0	5	49	1.25
59813--59863	23	2.2	23	82	0	57	45	1	1	50	1.24
61450--61495	23	2.0	23	100	0	92	43	13	8	34	1.74
71030--71072	21	2.0	21	82	8	52	13	4	20	60	1.51
72333--72573	72	3.3	72	90	2	378	31	27	16	24	1.96
75686--75712	9	3.0	9	100	0	54	22	11	44	22	1.84
81693--81741	24	2.0	24	88	0	71	51	2	0	46	1.12
82563--82605	2	21.5	2	100	0	86	48	0	0	51	1.00
86384--86428	21	2.1	22	83	4	56	24	22	4	48	1.68
89356--89395	21	1.9	21	94	0	71	30	15	7	47	1.72
89390--89488	33	3.0	33	94	1	164	32	7	15	45	1.73
89474--89528	13	4.2	13	75	13	58	34	3	12	49	1.59
89725--89781	21	2.7	21	91	0	96	19	26	26	28	1.99
97477--97544	27	2.6	27	90	4	113	30	11	14	42	1.82
101216--101296	26	3.1	26	87	5	128	32	13	17	37	1.89
101213--101302	25	3.6	25	79	18	114	31	12	16	40	1.85
101219--101305	26	3.3	27	83	13	110	28	12	17	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101514--101605	20	4.7	19	76	14	98	36	23	19	19	1.95
101533--101622	40	2.3	38	94	3	153	35	24	20	20	1.96
101551--101622	20	3.6	20	75	14	76	34	26	19	19	1.96
101796--101861	22	3.0	22	84	0	87	25	37	13	22	1.91
102190--102237	19	2.5	19	86	3	60	20	18	25	35	1.95
102191--102257	20	3.4	19	83	4	62	19	16	23	40	1.91
102206--102281	20	3.8	20	85	3	91	14	15	19	50	1.79

Tables:   1

The End!