genome.fa.s1050.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001050.1 Hibiscus syriacus cultivar Beakdansim tig00002080_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54253

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2289--2313	12	2.1	12	100	0	50	48	0	0	52	1.00
4462--4487	3	8.7	3	100	0	52	34	0	0	65	0.93
8893--8933	13	3.1	13	82	3	55	46	0	12	41	1.41
10495--11791	138	9.4	138	83	4	1429	33	19	20	27	1.96
16663--16690	14	2.0	14	100	0	56	42	0	7	50	1.30
21846--22004	41	3.9	41	91	1	257	37	25	18	18	1.94
21846--22004	20	7.8	20	78	8	169	37	25	18	18	1.94
21846--22004	81	2.0	82	93	1	275	37	25	18	18	1.94
22020--22094	27	2.8	27	95	0	132	37	33	9	20	1.84
22390--22468	20	3.9	21	80	5	76	51	15	18	13	1.76
22445--22525	33	2.5	33	89	0	126	46	20	20	11	1.81
23083--23192	20	5.4	20	87	7	159	19	19	28	33	1.96
23083--23192	41	2.7	40	90	5	159	19	19	28	33	1.96
23083--23215	41	3.3	40	84	9	146	20	18	27	33	1.96
23083--23215	61	2.2	61	85	10	175	20	18	27	33	1.96
23955--24043	31	2.9	30	83	3	106	44	8	5	40	1.59
23955--24052	30	3.2	30	78	9	101	43	9	5	41	1.58
24438--24535	30	3.2	31	74	9	87	43	7	6	42	1.56
24456--24538	30	2.7	31	77	3	89	45	7	6	40	1.56
26107--26181	38	2.0	37	82	10	91	50	4	0	45	1.20
27199--27286	13	6.7	13	68	15	56	14	7	1	76	1.07
27313--27347	18	1.9	18	88	11	54	25	2	0	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27343--27415	23	3.1	23	84	5	85	15	6	1	76	1.05
27230--27415	23	8.2	22	66	23	77	18	6	1	73	1.10
32591--33593	84	12.2	80	76	6	929	30	24	20	25	1.99
32591--33580	165	6.0	164	85	1	1139	30	24	20	25	1.99
34926--34986	6	9.5	6	78	18	61	18	3	1	77	0.99
34935--35071	16	8.2	16	66	20	59	18	5	1	73	1.11
35039--35105	16	4.2	16	77	11	66	14	7	1	76	1.08
35034--35137	41	2.4	43	80	15	117	15	6	1	75	1.09
35575--35629	23	2.4	23	90	0	83	47	10	5	36	1.62
37235--37269	17	2.1	17	100	0	70	22	5	34	37	1.78
47535--47559	2	12.5	2	100	0	50	52	0	0	48	1.00
50485--50525	16	2.6	16	88	3	57	29	21	12	36	1.90

Tables:   1

The End!