genome.fa.s1051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001051.1 Hibiscus syriacus cultivar Beakdansim tig00002081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104372

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5352--5553	109	1.8	110	84	3	273	39	9	15	35	1.80
6218--6268	23	2.2	23	85	0	66	31	11	17	39	1.86
6264--6616	72	4.8	74	86	3	453	34	12	10	41	1.78
6264--6616	145	2.4	146	86	4	487	34	12	10	41	1.78
6264--6644	149	2.6	146	83	6	482	34	12	10	42	1.77
7792--7846	20	2.7	20	91	2	83	23	12	34	29	1.92
8470--9048	290	2.0	288	94	1	1007	30	20	20	27	1.98
12500--12542	21	2.0	21	90	0	68	20	11	37	30	1.89
14643--14696	18	3.0	18	73	10	56	31	48	11	9	1.70
17163--17205	2	21.5	2	100	0	86	51	0	0	48	1.00
18326--18369	2	22.0	2	100	0	88	50	0	0	50	1.00
22345--22593	95	2.7	95	87	8	342	31	17	18	32	1.94
23312--24962	80	20.4	80	88	3	2282	33	23	18	23	1.97
23312--24962	244	6.8	240	87	2	2291	33	23	18	23	1.97
23312--24962	324	5.1	321	89	1	2331	33	23	18	23	1.97
26396--26477	30	2.8	30	78	9	80	19	13	7	59	1.57
27292--27332	22	1.9	22	90	5	66	31	2	2	63	1.20
30874--30911	16	2.3	17	86	4	51	50	2	5	42	1.39
31284--31335	20	2.7	19	76	11	52	40	3	0	55	1.18
39402--39482	40	2.0	40	100	0	162	30	12	22	34	1.91
42088--42139	26	2.0	26	88	7	79	44	9	9	36	1.70
42470--42521	15	3.5	15	83	0	77	7	61	19	11	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46888--47144	74	3.5	73	89	4	392	38	11	14	35	1.82
48284--48321	13	2.9	13	96	0	67	42	15	18	23	1.89
48281--48323	13	3.5	11	77	22	50	41	16	20	20	1.90
57980--58014	18	1.9	18	88	0	52	28	17	0	54	1.43
59316--59356	18	2.3	18	95	0	73	17	17	48	17	1.81
60295--60334	21	1.9	21	89	0	62	32	7	2	57	1.40
62767--62799	3	11.0	3	100	0	66	33	0	0	66	0.92
63282--63310	13	2.1	14	93	6	51	68	0	13	17	1.20
63286--63369	14	5.9	14	71	18	50	71	0	10	17	1.14
63536--63598	2	32.0	2	96	3	119	50	0	0	49	1.00
65225--65648	124	3.4	124	88	0	578	27	15	24	32	1.96
69485--69516	12	2.7	12	100	0	64	9	31	9	50	1.66
71436--71468	17	1.9	17	88	11	50	24	27	12	36	1.91
76689--76742	13	4.4	13	77	17	53	75	0	9	14	1.03
76830--76887	4	14.8	4	77	13	50	75	3	3	17	1.07
76830--76893	9	7.4	9	75	8	53	75	3	4	17	1.11
76703--76887	13	13.5	13	66	22	62	72	2	8	16	1.21
76991--77016	2	13.0	2	100	0	52	50	0	0	50	1.00
79455--79818	117	3.1	116	86	4	482	36	9	21	31	1.86
79455--79773	59	5.4	59	73	8	249	37	9	21	31	1.86
79455--79674	58	3.8	59	76	6	232	37	9	20	32	1.84
79514--79693	58	3.1	58	75	7	211	35	8	21	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79749--79878	59	2.2	59	80	5	147	36	10	21	30	1.88
80011--80152	45	3.2	45	89	1	214	40	5	21	31	1.77
80552--80576	12	2.1	12	100	0	50	24	16	24	36	1.94
80566--80605	21	1.9	21	89	0	62	30	22	22	25	1.99
85226--85662	59	7.5	58	74	7	334	35	10	22	30	1.88
85226--85614	117	3.3	117	89	1	555	36	11	21	30	1.88
85226--85662	117	3.7	117	85	3	463	35	10	22	30	1.88
85791--85931	45	3.2	45	87	1	203	39	4	24	31	1.77
88856--88898	13	3.3	13	78	12	52	48	20	11	18	1.79
89318--89409	3	30.3	3	80	6	69	56	0	38	5	1.22
89305--89382	41	1.9	41	89	0	120	50	0	41	8	1.34
90974--91009	14	2.6	14	95	0	63	33	0	22	44	1.53
91100--91139	19	2.1	19	95	0	71	45	15	22	17	1.85
91148--91352	19	11.4	19	78	17	242	14	21	17	46	1.83
91148--91352	72	2.8	70	87	7	259	14	21	17	46	1.83
91129--91366	33	6.8	33	74	16	221	13	23	18	45	1.84
91129--91366	53	4.5	52	87	10	342	13	23	18	45	1.84
93610--93656	24	2.0	24	87	8	69	38	21	14	25	1.92
94338--94607	20	13.5	20	87	1	290	20	17	25	37	1.94
94594--94676	21	4.0	21	73	6	78	25	16	24	33	1.96
94574--94672	42	2.4	43	77	11	100	21	18	23	37	1.94
98472--98521	2	26.0	2	92	8	86	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98472--98521	25	2.0	25	100	0	100	48	0	0	52	1.00
100589--100626	20	1.9	20	88	0	58	68	7	0	23	1.16
100612--100669	24	2.6	20	77	20	53	77	6	3	12	1.09
100620--100669	23	2.1	23	85	10	66	78	8	4	10	1.09
103154--103193	21	1.9	21	100	0	80	50	20	10	20	1.76

Tables:   1

The End!