Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001053.1 Hibiscus syriacus cultivar Beakdansim tig00002083_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88106
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:992 original size:17 final size:17
Alignment explanation
Indices: 970--1008 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
960 CATAATAATA
970 ATTTTAAAT-TATTGTAT
1 ATTTTAAATAT-TTGTAT
*
987 ATTTTAAATATTTTTAT
1 ATTTTAAATATTTGTAT
1004 ATTTT
1 ATTTT
1009 TGTTGATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
ATTTTAAATATTTGTAT
Found at i:5902 original size:74 final size:74
Alignment explanation
Indices: 5774--5959 Score: 232
Period size: 74 Copynumber: 2.5 Consensus size: 74
5764 TATTGTCGAG
* *
5774 TAGATAGTTTAACGT-ATAGGTAGTGTCTATTTTATTTTACTGTTTACATTATTAGTAACCTTGA
1 TAGATAGTTTAACGTAATAGGTAGCGTCTATTTTA-TTTACTGTTTACATTATTAGTAACCTTCA
*
5838 AATAAACCAA
65 AACAAACCAA
* * * *
5848 T-GAATATTTTAACGTAATAGGTAGCGCCTATTTTATTTACTGTTTATATTATTAGTAACTTTCA
1 TAG-ATAGTTTAACGTAATAGGTAGCGTCTATTTTATTTACTGTTTACATTATTAGTAACCTTCA
**
5912 AACAAACCGG
65 AACAAACCAA
* * *
5922 TAGGTAGTTTAACATAATAGGTACCGTCTATTTTATTT
1 TAGATAGTTTAACGTAATAGGTAGCGTCTATTTTATTT
5960 TAACCGATTA
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
73 1 0.01
74 76 0.80
75 18 0.19
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (74 bp):
TAGATAGTTTAACGTAATAGGTAGCGTCTATTTTATTTACTGTTTACATTATTAGTAACCTTCAA
ACAAACCAA
Found at i:15398 original size:2 final size:2
Alignment explanation
Indices: 15391--15421 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
15381 TTCTGACAGC
15391 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15422 GCTTATAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18117 original size:2 final size:2
Alignment explanation
Indices: 18110--18160 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
18100 CAAATTTTAA
18110 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18152 AT AT AT AT A
1 AT AT AT AT A
18161 AAAGGAAGGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:19623 original size:3 final size:3
Alignment explanation
Indices: 19611--19685 Score: 143
Period size: 3 Copynumber: 25.3 Consensus size: 3
19601 GAGTTGAAGG
19611 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
19658 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
19686 CAATCTCACA
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 69 0.97
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:21938 original size:28 final size:28
Alignment explanation
Indices: 21876--21941 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
21866 TTATGTACCA
21876 AAATCA-TGAAATAGCTTTGTATTTTCC
1 AAATCATTGAAATAGCTTTGTATTTTCC
21903 AAATCATTGAAATAGCTTTGTATTTTCC
1 AAATCATTGAAATAGCTTTGTATTTTCC
21931 AAATCATTGAA
1 AAATCATTGAA
21942 TTGGAGGTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 6 0.16
28 32 0.84
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (28 bp):
AAATCATTGAAATAGCTTTGTATTTTCC
Found at i:22725 original size:19 final size:19
Alignment explanation
Indices: 22689--22730 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
22679 TTAAAAAGAG
22689 AAAATGACATCACTTTTAA
1 AAAATGACATCACTTTTAA
*
22708 AAAATTGACTTCAC-TTTAA
1 AAAA-TGACATCACTTTTAA
22727 AAAA
1 AAAA
22731 AATTATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAATGACATCACTTTTAA
Found at i:22731 original size:20 final size:19
Alignment explanation
Indices: 22689--22731 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
22679 TTAAAAAGAG
22689 AAAATGACATCACTTTTAAA
1 AAAATGACATCAC-TTTAAA
* *
22709 AAATTGACTTCACTTTAAA
1 AAAATGACATCACTTTAAA
22728 AAAA
1 AAAA
22732 ATTATAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (19 bp):
AAAATGACATCACTTTAAA
Found at i:26211 original size:18 final size:18
Alignment explanation
Indices: 26170--26218 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
26160 ATATGGAATT
*
26170 GGATTCCAATTCC-TGAC
1 GGATTTCAATTCCTTGAC
* *
26187 AGATTTCAATTCCTTTAC
1 GGATTTCAATTCCTTGAC
26205 GGATTTCAATTCCT
1 GGATTTCAATTCCT
26219 CATAAACATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 11 0.41
18 16 0.59
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (18 bp):
GGATTTCAATTCCTTGAC
Found at i:26507 original size:66 final size:66
Alignment explanation
Indices: 26401--26533 Score: 266
Period size: 66 Copynumber: 2.0 Consensus size: 66
26391 AAATCACCTT
26401 TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
1 TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
26466 A
66 A
26467 TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
1 TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
26532 A
66 A
26533 T
1 T
26534 AGTATAAAAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (66 bp):
TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
A
Found at i:28860 original size:25 final size:25
Alignment explanation
Indices: 28825--28872 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
28815 GATATATAAA
* *
28825 ATTTATCGTAAACCGTAGCAAAAAC
1 ATTTATCGTAAACCATAACAAAAAC
*
28850 ATTTATTGTAAACCATAACAAAA
1 ATTTATCGTAAACCATAACAAAA
28873 TTGACATTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.48, C:0.17, G:0.08, T:0.27
Consensus pattern (25 bp):
ATTTATCGTAAACCATAACAAAAAC
Found at i:32423 original size:22 final size:22
Alignment explanation
Indices: 32389--32457 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
32379 AAAAAATAAT
* * *
32389 AAATAAAACAAAAAAATA-TTA
1 AAATGAAATAAAAAAATAGTAA
*
32410 AAATGATAATAAAATAATAGTAA
1 AAATGA-AATAAAAAAATAGTAA
* *
32433 AAATGAAATAAAAAAACAATAA
1 AAATGAAATAAAAAAATAGTAA
32455 AAA
1 AAA
32458 AACATACTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
21 5 0.13
22 26 0.67
23 8 0.21
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (22 bp):
AAATGAAATAAAAAAATAGTAA
Found at i:33168 original size:20 final size:19
Alignment explanation
Indices: 33139--33177 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
33129 GACTGTTCGA
33139 TGTTGTTGGTTTTGTGTTT
1 TGTTGTTGGTTTTGTGTTT
33158 TGTTGGTTGGTTTTGTGTTT
1 TGTT-GTTGGTTTTGTGTTT
33178 CGATGTTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (19 bp):
TGTTGTTGGTTTTGTGTTT
Found at i:33581 original size:11 final size:9
Alignment explanation
Indices: 33565--33591 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
33555 AAAATAAAAA
33565 ATATATATT
1 ATATATATT
33574 ATATATATT
1 ATATATATT
33583 ATATATATT
1 ATATATATT
33592 CTAAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATATATT
Found at i:33671 original size:38 final size:37
Alignment explanation
Indices: 33625--33860 Score: 154
Period size: 39 Copynumber: 6.5 Consensus size: 37
33615 AAACATTTTC
33625 AAACTATATATTATATATATTTAAAAATGTTTTTCAAA
1 AAACTATATATTATATATATTTAAAAATGTTTTT-AAA
* *
33663 AAACTATATATTATATACTTTTTAAAAATATTTTT-AA
1 AAACTATATATTATATA-TATTTAAAAATGTTTTTAAA
* *
33700 AAATTATATATTATATATATGTTTTCAAAATG-TTTTAAA
1 AAACTATATATTATATATA---TTTAAAAATGTTTTTAAA
* * * * * * *
33739 AAA-TAT-TA-TATATATATATATATATATATAT-AT
1 AAACTATATATTATATATATTTAAAAATGTTTTTAAA
* * * *
33772 ATA-TATATA-TATGTGT-TTTCAAAATG-TTTT-AA
1 AAACTATATATTATATATATTTAAAAATGTTTTTAAA
**
33804 AAACTATATATTATATA-AGTTTAAAAAATGTTTTTTTTTA
1 AAACTATATATTATATATA-TTT-AAAAATG--TTTTTAAA
33844 AAACTATATATTATATA
1 AAACTATATATTATATA
33861 ACTTGTTTTT
Statistics
Matches: 152, Mismatches: 30, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
32 5 0.03
33 22 0.14
34 13 0.09
35 3 0.02
36 15 0.10
37 20 0.13
38 24 0.16
39 32 0.21
40 18 0.12
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (37 bp):
AAACTATATATTATATATATTTAAAAATGTTTTTAAA
Found at i:33750 original size:2 final size:2
Alignment explanation
Indices: 33741--33783 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
33731 GTTTTAAAAA
33741 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33782 AT
1 AT
33784 GTGTTTTCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:33993 original size:36 final size:38
Alignment explanation
Indices: 33900--34010 Score: 133
Period size: 37 Copynumber: 3.0 Consensus size: 38
33890 TATTATATAA
* *
33900 GTTTTCAAAAATTATATATTATATATATTTTC-AAAAT-
1 GTTTT-AAAAACTATATAATATATATATTTTCAAAAATC
*
33937 GTTTTCAAAAACTATATAATATATACATTTTCAAAAATC
1 GTTTT-AAAAACTATATAATATATATATTTTCAAAAATC
*
33976 G-TTT-AAAACTATGTAATATATATA-TTTCAAAAATC
1 GTTTTAAAAACTATATAATATATATATTTTCAAAAATC
34011 ATTTGCAAAC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
35 11 0.16
36 18 0.27
37 29 0.43
38 8 0.12
39 1 0.01
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (38 bp):
GTTTTAAAAACTATATAATATATATATTTTCAAAAATC
Found at i:34021 original size:36 final size:35
Alignment explanation
Indices: 33907--34038 Score: 113
Period size: 36 Copynumber: 3.6 Consensus size: 35
33897 TAAGTTTTCA
* * **
33907 AAAATTATATATTATATATATTTTC-AAAATGTTTT
1 AAAACTATATAATATATATA-TTTCAAAAATCATTT
* *
33942 CAAAAACTATATAATATATACATTTTCAAAAATCGTTT
1 --AAAACTATATAATATATATA-TTTCAAAAATCATTT
*
33980 AAAACTATGTAATATATATATTTCAAAAATCATTT
1 AAAACTATATAATATATATATTTCAAAAATCATTT
* *
34015 GCAAACTCTAATATATATATATAT
1 -AAAACTAT-ATA-ATATATATAT
34039 ATATATATAA
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
35 14 0.17
36 24 0.30
37 24 0.30
38 18 0.22
ACGTcount: A:0.46, C:0.09, G:0.03, T:0.42
Consensus pattern (35 bp):
AAAACTATATAATATATATATTTCAAAAATCATTT
Found at i:34702 original size:85 final size:85
Alignment explanation
Indices: 34584--34990 Score: 561
Period size: 85 Copynumber: 4.8 Consensus size: 85
34574 GTGTCATCGT
* * * ** *
34584 GCTGAATGGAATCGAACTCGATA-GTTTTTGTTGACAGATA-CCTTTTCTCGATTTAAGCTATGC
1 GCTGAATGTAATCGAACTCGA-AGGTCTTTGTTGACAGATAGCC-CTTCTCGCCTTGAGCTATGC
* * *
34647 TGTAAATTTGACATGCCCTTAA
64 TGTAAATTTGATATGCCTTTGA
* * *
34669 GCTGAATGGAATCGAACTCGAAGGTCTTCGTTGACAGATAGCCCTTCTCGCCTTGAGCTATCCTG
1 GCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGCTG
*
34734 TAAATTTGATGTGCCTTTGA
66 TAAATTTGATATGCCTTTGA
* * *
34754 GCTGAATATAATCGAACTCGAAGGTC-TAGATTGATAGATAGCCCTTCTCGCCTTGAGCTATGCT
1 GCTGAATGTAATCGAACTCGAAGGTCTTTG-TTGACAGATAGCCCTTCTCGCCTTGAGCTATGCT
*
34818 GTAAATTTGATATGCCTTTTA
65 GTAAATTTGATATGCCTTTGA
* * *
34839 GCTGAATGTAATCGAACTCGAAGGTCTTTGCTGACAGATAACCCTTCT-GCCTTGAGTTATGCTG
1 GCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGCTG
*
34903 TAAATTTGATATGTCTTTGA
66 TAAATTTGATATGCCTTTGA
*
34923 GCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGACCTTCTCGCCTTGAGCTATGCTG
1 GCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGCTG
34988 TAA
66 TAA
34991 TAGGCTTGGG
Statistics
Matches: 287, Mismatches: 30, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
84 81 0.28
85 202 0.70
86 4 0.01
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (85 bp):
GCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTATGCTG
TAAATTTGATATGCCTTTGA
Found at i:35898 original size:36 final size:36
Alignment explanation
Indices: 35857--35968 Score: 109
Period size: 39 Copynumber: 3.0 Consensus size: 36
35847 ATGTTTATCC
* *
35857 TCAAAATGTTTTAAAAATTATATTATATATATGTTT
1 TCAAAATGTTTTAAAAATTATATAATATATATATTT
* *
35893 TCAAAATGTTTTTTTAAAAACTATATAATATATACATTT
1 TCAAAATG---TTTTAAAAATTATATAATATATATATTT
* *
35932 TCAAAAATCG-TTTAAAACTATATATCATATATATATT
1 TC-AAAAT-GTTTTAAAAAT-TATATAATATATATATT
35969 GTATAATATA
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
36 8 0.13
37 7 0.11
38 15 0.24
39 26 0.42
40 5 0.08
41 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.46
Consensus pattern (36 bp):
TCAAAATGTTTTAAAAATTATATAATATATATATTT
Found at i:35963 original size:2 final size:2
Alignment explanation
Indices: 35950--35992 Score: 54
Period size: 2 Copynumber: 22.0 Consensus size: 2
35940 CGTTTAAAAC
*
35950 TA TA TA TCA TA TA TA TA T- TG TA TA -A TA TA TA TA TA TA TA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
35991 TA
1 TA
35993 AAAAAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
1 2 0.05
2 33 0.89
3 2 0.05
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:44939 original size:24 final size:25
Alignment explanation
Indices: 44894--44940 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
44884 TCACGAACAA
*
44894 GCTCATTTGAAAAGTTCGTTTATTG
1 GCTCATTTGAAAAGTTCATTTATTG
*
44919 GCTCATTT-ATAAGTTCATTTAT
1 GCTCATTTGAAAAGTTCATTTAT
44941 CAAGTCAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.47
Consensus pattern (25 bp):
GCTCATTTGAAAAGTTCATTTATTG
Found at i:45144 original size:23 final size:23
Alignment explanation
Indices: 45112--45184 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
45102 TATGAAAATA
* *
45112 TAAACCAACATGTTCACGGTCAC
1 TAAACGAACATGTTCACGGACAC
*
45135 TAAACGAACATGTT-AGCAGACAC
1 TAAACGAACATGTTCA-CGGACAC
* * * *
45158 TGAACGAATATGTTCACGAACGC
1 TAAACGAACATGTTCACGGACAC
45181 TAAA
1 TAAA
45185 TGAATTGAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
22 1 0.03
23 37 0.95
24 1 0.03
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.21
Consensus pattern (23 bp):
TAAACGAACATGTTCACGGACAC
Found at i:48222 original size:25 final size:26
Alignment explanation
Indices: 48166--48227 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
48156 TTTTCGTTCC
48166 TAAAATTTTATATGTTTGCCCCCTCT
1 TAAAATTTTATATGTTTGCCCCCTCT
48192 TAAAATTTTATATGTTTGCCCCCTCT
1 TAAAATTTTATATGTTTGCCCCCTCT
*
48218 TAAATTTTTA
1 TAAAATTTTA
48228 GAAATTCACC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (26 bp):
TAAAATTTTATATGTTTGCCCCCTCT
Found at i:49490 original size:22 final size:22
Alignment explanation
Indices: 49462--49514 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
49452 TTTCATTTCA
49462 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
49484 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
49506 CGTTGCGAT
1 CGTTGCGAT
49515 TTTTCAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.17, C:0.19, G:0.28, T:0.36
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:50044 original size:39 final size:39
Alignment explanation
Indices: 49965--50045 Score: 110
Period size: 40 Copynumber: 2.1 Consensus size: 39
49955 ACTATTTAAG
* * * *
49965 GCTCAATCCCACATAGTATTGGGAACAAGTGTTGGTAAT
1 GCTCAATCCCACATAGTATTGGAAACAACTATTGGGAAT
50004 GCTCAAATCCCACATAGTATTGGAAAC-ACTATTGGGAAT
1 GCTC-AATCCCACATAGTATTGGAAACAACTATTGGGAAT
50043 GCT
1 GCT
50046 ATTTAAGGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
39 16 0.43
40 21 0.57
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (39 bp):
GCTCAATCCCACATAGTATTGGAAACAACTATTGGGAAT
Found at i:50284 original size:22 final size:22
Alignment explanation
Indices: 50258--50311 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
50248 AATTTGAAAA
50258 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
50280 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGACAACTGTAGACT
50302 ATCGCAACGA
1 ATCGCAACGA
50312 ATTTGGAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.37, C:0.28, G:0.19, T:0.17
Consensus pattern (22 bp):
ATCGCAACGACAACTGTAGACT
Found at i:50524 original size:19 final size:19
Alignment explanation
Indices: 50502--50539 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
50492 GAGATTTTTG
*
50502 ATCACTGATATTATTTTCT
1 ATCACTGAGATTATTTTCT
*
50521 ATCATTGAGATTATTTTCT
1 ATCACTGAGATTATTTTCT
50540 CTTTACTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.53
Consensus pattern (19 bp):
ATCACTGAGATTATTTTCT
Found at i:51630 original size:18 final size:18
Alignment explanation
Indices: 51607--51643 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
51597 ATTTTTCCCT
51607 TTTTATTTA-GAGTATTTA
1 TTTTATTTATGA-TATTTA
51625 TTTTATTTATGATATTTA
1 TTTTATTTATGATATTTA
51643 T
1 T
51644 CATCCATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (18 bp):
TTTTATTTATGATATTTA
Found at i:55977 original size:21 final size:21
Alignment explanation
Indices: 55951--56000 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
55941 AAGTTCACAT
55951 GTTTGGAAGGGTATATCTCAA
1 GTTTGGAAGGGTATATCTCAA
55972 GTTTGGAAGGGTATATCTCAA
1 GTTTGGAAGGGTATATCTCAA
55993 GTTTGGAA
1 GTTTGGAA
56001 CAAGGTGCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.08, G:0.30, T:0.34
Consensus pattern (21 bp):
GTTTGGAAGGGTATATCTCAA
Found at i:61777 original size:34 final size:34
Alignment explanation
Indices: 61734--61800 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
61724 AATACGCTGG
*
61734 GCATCCGAGGTCATCAGACCGAGGCCATCCGAAA
1 GCATCCGAGGCCATCAGACCGAGGCCATCCGAAA
*
61768 GCATCCGAGGCCATCCGACCGAGGCCATCCGAA
1 GCATCCGAGGCCATCAGACCGAGGCCATCCGAA
61801 CGAGTTATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.10
Consensus pattern (34 bp):
GCATCCGAGGCCATCAGACCGAGGCCATCCGAAA
Found at i:61791 original size:14 final size:14
Alignment explanation
Indices: 61772--61804 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
61762 CCGAAAGCAT
61772 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
61786 CCGAGGCCATCCGA
1 CCGAGGCCATCCGA
*
61800 ACGAG
1 CCGAG
61805 TTATGCGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.39, G:0.30, T:0.06
Consensus pattern (14 bp):
CCGAGGCCATCCGA
Found at i:61843 original size:33 final size:33
Alignment explanation
Indices: 61786--61870 Score: 100
Period size: 33 Copynumber: 2.6 Consensus size: 33
61776 GGCCATCCGA
* * * * * *
61786 CCGAGGCCATCCGAACGAGTTATGCGAGGGCAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAGAGAAT
61819 CCGAGGGCAACCGAGCGAGCTATGCGAGAGAAT
1 CCGAGGGCAACCGAGCGAGCTATGCGAGAGAAT
61852 CCGAGGG-AAGCCGAGCGAG
1 CCGAGGGCAA-CCGAGCGAG
61871 GGTAGGTCGC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
32 2 0.04
33 43 0.96
ACGTcount: A:0.27, C:0.26, G:0.38, T:0.09
Consensus pattern (33 bp):
CCGAGGGCAACCGAGCGAGCTATGCGAGAGAAT
Found at i:62001 original size:29 final size:29
Alignment explanation
Indices: 61959--62044 Score: 127
Period size: 29 Copynumber: 3.0 Consensus size: 29
61949 GAGCAAGGGT
61959 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
61988 AGGTCGCCCGGAGTGCATGGCGACCTACA
1 AGGTCGCCCGGAGTGCATGGCGACCTACA
* * * **
62017 AAGTCGCCCGAAATATATGGCGACCTAC
1 AGGTCGCCCGGAGTGCATGGCGACCTAC
62045 GGTCAACACT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.15
Consensus pattern (29 bp):
AGGTCGCCCGGAGTGCATGGCGACCTACA
Found at i:62812 original size:21 final size:21
Alignment explanation
Indices: 62783--62822 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62773 TTAATGAGTC
*
62783 TAACGAGCAACGAGTCGAGCT
1 TAACAAGCAACGAGTCGAGCT
*
62804 TAACAAGCATCGAGTCGAG
1 TAACAAGCAACGAGTCGAG
62823 TTGAGCAGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.23, G:0.28, T:0.15
Consensus pattern (21 bp):
TAACAAGCAACGAGTCGAGCT
Found at i:62911 original size:31 final size:30
Alignment explanation
Indices: 62819--62915 Score: 94
Period size: 31 Copynumber: 3.3 Consensus size: 30
62809 AGCATCGAGT
* ** *
62819 CGAGTTGAGCAGCAATTTTTTTTAACAAGCA
1 CGAGTCGAGCAGCAA-AATTTTTAACGAGCA
*
62850 CAAGTCGAGCA-C--AA-TTTTAACGAGCAA
1 CGAGTCGAGCAGCAAAATTTTTAACGAGC-A
62877 CGAGTCGAGCAGCAAAAATTTTTAACGAGCA
1 CGAGTCGAGCAGC-AAAATTTTTAACGAGCA
62908 CGAGTCGA
1 CGAGTCGA
62916 TCACTACCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
26 10 0.19
27 11 0.20
28 1 0.02
30 1 0.02
31 20 0.37
32 11 0.20
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.23
Consensus pattern (30 bp):
CGAGTCGAGCAGCAAAATTTTTAACGAGCA
Found at i:72643 original size:21 final size:21
Alignment explanation
Indices: 72619--72665 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
72609 ATTTTGACTA
72619 TCGCATTGCAATTTCCCAAAT
1 TCGCATTGCAATTTCCCAAAT
* * * *
72640 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCAATTTCCCAAAT
72661 TCGCA
1 TCGCA
72666 ATACGAATAC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (21 bp):
TCGCATTGCAATTTCCCAAAT
Found at i:72691 original size:41 final size:41
Alignment explanation
Indices: 72646--72728 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 41
72636 AAATTCGCGT
* * *
72646 TGCGATTTTCCTAATTCGCAATACGAA-TACGTAAATCGCAA
1 TGCGA-TTACCTAAATCGCAATACGAATTACGAAAATCGCAA
* * *
72687 TGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCAA
1 TGCGATTACCTAAATCGCAATACGAATTACGAAAATCGCAA
72728 T
1 T
72729 ACGAGCACGT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 17 0.49
41 18 0.51
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (41 bp):
TGCGATTACCTAAATCGCAATACGAATTACGAAAATCGCAA
Found at i:72722 original size:21 final size:21
Alignment explanation
Indices: 72661--72728 Score: 95
Period size: 20 Copynumber: 3.3 Consensus size: 21
72651 TTTTCCTAAT
*
72661 TCGCAATACGAA-TACGTAAA
1 TCGCAATGCGAATTACGTAAA
72681 TCGCAATGCG-ATTACGTAAA
1 TCGCAATGCGAATTACGTAAA
* *
72701 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGTAAA
72722 TCGCAAT
1 TCGCAAT
72729 ACGAGCACGT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
19 1 0.02
20 27 0.63
21 15 0.35
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (21 bp):
TCGCAATGCGAATTACGTAAA
Found at i:73155 original size:19 final size:19
Alignment explanation
Indices: 73095--73162 Score: 91
Period size: 19 Copynumber: 3.5 Consensus size: 19
73085 AAAAATGACT
*
73095 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATAAAA
* *
73114 ATCGCAACGAGAGAACGAAAA
1 ATCGCAACGCGA-AA-TAAAA
73135 ATCGCAACGCGAAATAAAA
1 ATCGCAACGCGAAATAAAA
73154 ATCGCAACG
1 ATCGCAACG
73163 AGAGAATCGT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 24 0.57
20 4 0.10
21 14 0.33
ACGTcount: A:0.49, C:0.22, G:0.21, T:0.09
Consensus pattern (19 bp):
ATCGCAACGCGAAATAAAA
Found at i:73229 original size:20 final size:20
Alignment explanation
Indices: 73204--73241 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
73194 CGCGATTATA
73204 GTTTCGCGTTGCGATTTTTG
1 GTTTCGCGTTGCGATTTTTG
73224 GTTTCGCGTTGCGATTTT
1 GTTTCGCGTTGCGATTTT
73242 CATTTCAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.16, G:0.29, T:0.50
Consensus pattern (20 bp):
GTTTCGCGTTGCGATTTTTG
Found at i:73578 original size:186 final size:181
Alignment explanation
Indices: 73338--73708 Score: 561
Period size: 186 Copynumber: 2.0 Consensus size: 181
73328 ATGGATTGCA
*
73338 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAAT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTATTAAAGAATACACAAT
73402 TTAGCAGAATTGGCAGCAAACGAACAAATTTACTTTCAACCAAAAGACAAAAC-AAAGACAAATA
66 TTAGCAGAATTGGCAGCAAACGAACAAATTTAC-TTCAACCAAAAGACAAAACAAAAGAC-AATA
73466 CTAACTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
129 CTAACTTCACAGTGTT----AA-A-ACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
* * * *
73525 TTACTTTCAACCAAAAGA-TAAACAAAGAC-AATACTAACTTCACAGTGTTAAAGAATACATAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTATTAAAGAATACACAAT
* *
73588 TTAGCAGAATTGGCAGCAACCGAATAAATTTACTTCAACCAAAAGACAAAACAAAAGACAATACT
66 TTAGCAGAATTGGCAGCAAACGAACAAATTTACTTCAACCAAAAGACAAAACAAAAGACAATACT
* *
73653 AACTTCACAGTGTTAAAACAGTTTAGCAGTATTGGCAGCAACCGAATAAAT
131 AACTTCACAGTGTTAAAACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
73704 TTACT
1 TTACT
73709 AAGCAATCTA
Statistics
Matches: 173, Mismatches: 9, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
179 37 0.21
180 1 0.01
181 2 0.01
185 39 0.23
186 67 0.39
187 14 0.08
188 13 0.08
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (181 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTATTAAAGAATACACAAT
TTAGCAGAATTGGCAGCAAACGAACAAATTTACTTCAACCAAAAGACAAAACAAAAGACAATACT
AACTTCACAGTGTTAAAACAGTTTAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:73601 original size:92 final size:94
Alignment explanation
Indices: 73338--73708 Score: 575
Period size: 94 Copynumber: 4.1 Consensus size: 94
73328 ATGGATTGCA
* * *
73338 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAAT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
73402 TTAGCAGAATTGGCAGCAAACGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
73431 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
73496 TTAGCAGAATTGGCAGCAACCGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
* *
73525 TTACTTTCAACCAAAAGA-TAAACAAAGAC-AATACTAACTTCACAGTGTTAAAGAATACATAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
73588 TTAGCAGAATTGGCAGCAACCGAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
73617 TTAC-TTCAACCAAAAGACAAAACAAAAGAC-AATACTAACTTCACAGTGTT----AA-A-ACAG
1 TTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAG
* *
73674 TTTAGCAGTATTGGCAGCAACCGAATAAAT
65 TTTAGCAGAATTGGCAGCAACCGAACAAAT
73704 TTACT
1 TTACT
73709 AAGCAATCTA
Statistics
Matches: 264, Mismatches: 10, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
87 36 0.14
88 1 0.00
89 2 0.01
91 13 0.05
92 69 0.26
93 40 0.15
94 103 0.39
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (94 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
TTAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:75428 original size:20 final size:20
Alignment explanation
Indices: 75403--75466 Score: 85
Period size: 20 Copynumber: 3.2 Consensus size: 20
75393 TTTTGGTTGA
75403 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
*
75423 AATGAAAATCGCAACGCG-G
1 AATGAAAATCGCAACGAGAG
**
75442 AAATGACTATCGCAACGAGAG
1 -AATGAAAATCGCAACGAGAG
75463 AATG
1 AATG
75467 GCAACGCGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 36 0.95
21 1 0.03
ACGTcount: A:0.45, C:0.17, G:0.25, T:0.12
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:76136 original size:21 final size:21
Alignment explanation
Indices: 76112--76198 Score: 113
Period size: 21 Copynumber: 4.2 Consensus size: 21
76102 TATTCGCATT
76112 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
76133 GCGAA-TACGTAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
76153 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* * *
76174 GCGAATTTGGGAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
76195 GCGA
1 GCGA
76199 TAGTCAGAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
20 17 0.30
21 39 0.70
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:76156 original size:41 final size:42
Alignment explanation
Indices: 76105--76198 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 42
76095 ATTTACGTAT
* *
76105 TCGCATTGCGAATTAGGAAAATCGCAACGCGAA-TACGTAAA
1 TCGCAATGCGAATTAGGAAAATCGCAACGCGAATTACGGAAA
**
76146 TCGCAATGCGAATTAGGAAAATCGCAACGCGAATTTGGGAAA
1 TCGCAATGCGAATTAGGAAAATCGCAACGCGAATTACGGAAA
76188 TCGCAATGCGA
1 TCGCAATGCGA
76199 TAGTCAGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
41 32 0.67
42 16 0.33
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.19
Consensus pattern (42 bp):
TCGCAATGCGAATTAGGAAAATCGCAACGCGAATTACGGAAA
Found at i:79840 original size:14 final size:14
Alignment explanation
Indices: 79823--79859 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
79813 TATAATTAAA
79823 TAAATGTAAAG-TAT
1 TAAAT-TAAAGATAT
79837 TAAATTAAAGATAT
1 TAAATTAAAGATAT
79851 TAAATTAAA
1 TAAATTAAA
79860 AGTTAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (14 bp):
TAAATTAAAGATAT
Found at i:82305 original size:29 final size:29
Alignment explanation
Indices: 82269--82326 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
82259 CACCCAAGTC
*
82269 CAAGAAACATAAGTTTAATCAATGTCCTT
1 CAAGAAACATAAGTTTAATCAATGCCCTT
82298 CAAGAAACATAAGTTTAATCAATGCCCTT
1 CAAGAAACATAAGTTTAATCAATGCCCTT
82327 ACTTTGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.29
Consensus pattern (29 bp):
CAAGAAACATAAGTTTAATCAATGCCCTT
Done.