Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001054.1 Hibiscus syriacus cultivar Beakdansim tig00002086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38471

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2144--2173
2
15.0
2
100
0
60
50
0
0
50
1.00
2279--2363
31
2.7
32
83
3
111
22
18
7
51
1.70
3043--3073
16
1.9
16
100
0
62
38
12
19
29
1.89
3148--3203
23
2.4
23
93
0
94
28
17
14
39
1.89
5675--5764
41
2.2
42
92
6
148
20
11
20
48
1.79
5993--6039
22
2.1
23
88
4
69
44
4
0
51
1.21
6033--6079
23
2.0
23
83
0
58
55
2
2
40
1.24
6206--6249
22
2.0
23
90
4
72
54
2
0
43
1.12
6329--6371
13
2.9
14
75
24
52
62
0
0
37
0.95
6579--6637
14
4.1
14
73
4
55
35
13
5
45
1.66
8655--8779
57
2.2
57
94
0
214
48
12
20
18
1.79
9704--9768
25
2.6
25
87
0
94
13
23
13
49
1.78
10984--11014
15
2.1
15
93
0
53
45
0
0
54
0.99
11781--12007
45
5.0
45
88
0
355
22
46
10
21
1.80
11781--12007
90
2.5
90
97
0
436
22
46
10
21
1.80
16542--16583
18
2.5
16
79
20
50
0
11
19
69
1.19
17350--17393
21
2.2
21
84
11
58
40
0
20
38
1.53
20124--20265
74
1.9
76
85
2
198
21
13
26
38
1.90
21897--21923
2
13.5
2
100
0
54
51
0
0
48
1.00
23535--23668
69
1.9
69
92
0
223
41
23
10
24
1.85
23682--23717
2
18.0
2
94
0
63
52
47
0
0
1.00
23717--23745
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30821--30867
2
23.0
2
95
4
85
48
2
0
48
1.13
37767--37836
3
22.7
3
85
5
95
37
0
0
62
0.95

Tables:   1

The End!