Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001055.1 Hibiscus syriacus cultivar Beakdansim tig00002087_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87686

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1999--2023
2
12.5
2
100
0
50
48
0
0
52
1.00
5843--5875
16
2.1
16
94
0
57
24
30
0
45
1.53
13248--13298
20
2.5
20
87
0
66
23
17
23
35
1.95
14959--15024
29
2.2
30
83
2
80
15
30
22
31
1.95
17374--17431
20
2.6
22
89
10
84
31
20
22
25
1.98
24691--24762
33
2.2
33
97
0
135
22
13
34
29
1.93
27551--27643
45
2.1
45
95
0
168
30
15
34
20
1.93
27651--27693
17
2.5
17
85
7
61
32
2
2
62
1.20
27676--28610
76
12.3
76
96
0
1690
21
20
20
36
1.95
29755--29783
13
2.2
13
100
0
58
6
62
31
0
1.22
30501--30574
15
5.1
14
76
19
55
58
1
0
40
1.07
30508--30572
3
21.0
3
81
6
76
60
1
0
38
1.07
30543--30578
18
2.0
18
94
0
63
58
0
0
41
0.98
30701--32178
76
19.5
76
96
0
2663
35
21
21
21
1.96
30701--32178
455
3.2
456
98
0
2780
35
21
21
21
1.96
32847--32901
22
2.5
22
81
0
65
40
10
10
38
1.76
34385--34549
75
2.2
75
96
1
303
31
21
15
32
1.94
34422--34537
36
3.1
36
64
20
85
35
19
15
29
1.93
35563--35781
83
2.6
83
95
0
393
37
21
14
26
1.92
43871--43899
13
2.2
13
100
0
58
6
62
31
0
1.22
44616--44686
14
5.1
14
73
20
51
57
1
0
40
1.07
44623--44684
3
20.0
3
80
6
70
59
1
0
38
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44793--44841
17
3.1
17
74
14
59
44
4
4
46
1.41
47111--47142
16
2.0
16
100
0
64
31
6
50
12
1.65
64819--64885
24
2.7
24
71
15
64
25
19
14
40
1.90
70159--70297
61
2.3
61
82
3
165
43
3
20
33
1.69
75668--75694
6
4.5
6
100
0
54
55
0
0
44
0.99
77093--77151
11
5.3
11
86
8
75
62
0
1
35
1.05
77365--77392
12
2.3
12
100
0
56
42
17
14
25
1.87
77761--78141
106
3.6
106
86
0
503
22
17
25
34
1.96
79884--79935
25
2.0
27
88
11
81
0
17
9
73
1.09
85019--85103
43
2.0
42
93
2
143
17
15
24
42
1.88
85558--86052
55
9.2
54
79
10
332
31
24
15
28
1.95
85591--86052
106
4.3
105
83
9
487
30
24
15
29
1.96
85646--86070
55
8.0
51
78
13
346
31
24
15
28
1.95
86071--86175
38
2.8
38
98
0
201
20
20
18
41
1.90
87447--87580
45
2.7
49
79
11
141
8
16
0
74
1.09
87445--87578
8
15.5
8
67
19
56
8
16
0
74
1.09

Tables:   1

The End!