genome.fa.s1056.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001056.1 Hibiscus syriacus cultivar Beakdansim tig00002091_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77503

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14114--14252	23	6.3	23	83	11	123	33	28	15	23	1.94
14100--14210	23	4.9	23	83	4	145	32	27	16	24	1.96
14100--14231	46	3.0	44	83	4	156	32	27	15	24	1.96
21549--21621	34	2.2	34	87	4	105	27	16	4	52	1.62
21591--21649	26	2.3	26	93	0	100	22	15	3	59	1.51
22108--22203	17	5.6	17	98	0	183	12	20	17	48	1.79
26132--26214	26	3.3	25	77	15	82	78	3	14	3	1.03
26132--26197	26	2.6	25	85	7	87	78	4	13	3	1.02
26143--26207	11	5.2	12	83	12	71	80	4	15	0	0.88
26181--26214	10	3.3	10	91	4	50	82	0	14	2	0.79
29634--30139	122	4.1	122	80	5	527	35	22	14	27	1.93
29632--30137	246	2.1	244	80	3	561	35	23	14	27	1.93
33532--33571	21	1.9	21	89	0	62	10	25	40	25	1.86
33552--33614	20	2.9	21	79	9	65	15	25	34	23	1.95
40385--40414	16	1.9	15	93	6	51	20	0	6	73	1.05
40487--40524	10	3.9	10	83	16	53	23	0	2	73	0.95
40484--40525	13	3.3	12	81	18	50	23	0	2	73	0.94
40628--40711	26	3.3	26	77	12	93	23	14	3	58	1.52
40677--40742	33	2.0	34	84	3	89	30	15	3	51	1.58
44853--44892	21	1.9	21	85	10	55	35	10	2	52	1.48
47817--47846	16	1.9	15	93	6	51	20	0	6	73	1.05
47919--47956	10	3.9	10	83	16	53	23	0	2	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47916--47957	13	3.3	12	81	18	50	23	0	2	73	0.94
48050--48165	32	3.9	30	73	22	95	25	13	3	56	1.53
48050--48160	26	3.8	28	77	11	84	26	14	2	56	1.51
48060--48144	26	3.3	26	77	9	93	23	14	3	58	1.51
48110--48175	33	2.0	34	84	3	89	30	15	3	51	1.58
55979--56017	19	2.0	20	90	5	62	58	10	0	30	1.31
56435--56706	46	5.9	46	89	0	400	24	21	9	43	1.83
56475--56693	20	9.7	20	68	22	114	22	23	10	42	1.85
57279--57330	20	2.6	19	88	11	70	17	28	19	34	1.94
57881--57910	3	10.0	3	100	0	60	66	0	33	0	0.92
59287--59343	29	1.9	30	82	10	73	43	7	14	35	1.72
62410--62484	21	3.5	21	69	7	60	34	26	16	22	1.95
69637--69706	21	3.2	21	84	7	104	38	25	18	17	1.92
71915--71996	39	2.1	38	86	6	112	28	6	14	51	1.66

Tables:   1

The End!