Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001059.1 Hibiscus syriacus cultivar Beakdansim tig00002094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71674

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4814--4887
2
37.0
2
100
0
148
50
0
0
50
1.00
6047--6085
7
5.6
7
82
11
53
12
2
0
84
0.72
6049--6085
15
2.5
15
91
4
58
10
2
0
86
0.67
6211--6248
15
2.5
15
91
4
58
13
10
0
76
1.02
6341--6376
4
9.8
4
82
17
51
22
0
0
77
0.76
6329--6368
14
3.1
13
92
7
64
22
0
0
77
0.77
6329--6376
22
2.1
22
81
11
53
22
0
0
77
0.78
6335--6377
22
1.9
23
85
4
61
23
0
0
76
0.78
16196--16227
2
17.0
2
87
12
50
46
0
0
53
1.00
17295--17333
18
2.0
21
85
14
57
41
0
0
58
0.98
17282--17415
61
2.2
61
77
11
141
28
7
0
63
1.26
18180--18246
22
3.0
22
93
2
107
25
26
26
20
1.99
19936--19980
21
2.1
21
87
0
63
15
24
28
31
1.96
23116--23182
22
3.0
22
95
2
116
25
28
26
19
1.99
24872--24916
21
2.1
21
84
8
56
17
24
26
31
1.97
25702--25753
24
2.1
25
85
3
70
13
9
3
73
1.23
25709--25752
15
3.0
14
80
9
52
15
6
0
77
0.97
27894--27952
28
2.1
28
87
6
84
57
8
11
22
1.61
30643--30701
31
1.9
31
92
0
100
64
13
8
13
1.49
30651--30728
29
2.6
29
82
11
88
64
15
7
12
1.49
30725--30828
29
3.6
29
74
11
97
58
2
13
25
1.49
32627--32865
131
1.8
130
84
0
325
25
16
32
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33333--33530
104
1.9
104
85
6
276
39
10
15
34
1.81
33521--33608
36
2.4
36
79
7
106
37
7
15
38
1.77
33496--33610
36
3.2
36
74
9
101
39
9
17
33
1.82
33826--33869
16
2.8
16
96
0
79
22
0
27
50
1.50
39533--39589
29
2.0
29
89
0
87
66
14
7
12
1.43
39604--39706
29
3.5
29
77
9
104
56
5
14
23
1.60
39604--39727
59
2.1
59
82
11
148
57
8
13
20
1.62
39694--39806
60
1.9
59
81
1
136
57
14
9
18
1.64
39764--39822
29
2.0
29
93
0
100
49
13
15
22
1.79
42734--42781
3
16.3
3
91
4
80
35
2
0
62
1.07
44659--44697
19
2.1
19
90
0
60
48
2
0
48
1.15
47166--47203
20
1.9
20
89
10
60
47
5
5
42
1.48
49498--49544
24
2.0
24
86
0
67
40
25
21
12
1.89
50944--51000
28
2.0
28
86
0
78
33
7
17
42
1.76
51045--51104
21
2.8
22
75
7
61
60
3
0
36
1.14
53488--53542
23
2.4
21
77
16
56
52
3
0
43
1.18
53504--53550
21
2.1
23
84
7
62
48
0
0
51
1.00
56036--56161
3
40.0
3
81
16
132
31
1
1
65
1.12
57617--57750
30
4.5
30
75
7
121
20
15
8
55
1.66
57640--57778
30
4.7
29
72
12
95
18
15
9
56
1.66
58560--58597
17
2.2
18
85
4
51
23
5
7
63
1.42
63950--64184
36
6.6
36
90
1
350
30
16
15
37
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64304--64499
66
3.0
63
80
7
196
25
21
15
37
1.93
64471--64572
28
3.5
28
84
9
116
24
16
12
46
1.82
64596--64834
133
1.8
129
82
5
309
26
30
16
25
1.97
65036--65077
11
4.0
11
85
14
54
33
0
0
66
0.92
65030--65084
18
3.0
19
82
12
62
32
0
0
67
0.91
69439--69548
49
2.2
48
82
9
125
50
0
3
45
1.19
69780--69896
38
3.1
39
77
11
127
43
0
18
36
1.56
71239--71418
99
1.8
95
81
10
220
30
2
13
53
1.52

Tables:   1

The End!