Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000106.1 Hibiscus syriacus cultivar Beakdansim tig00000190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82320

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11882--11935
2
27.5
2
96
3
101
48
0
0
51
1.00
14714--14803
33
2.7
33
96
0
171
14
16
6
62
1.52
14723--14774
26
2.0
26
82
14
63
15
17
7
59
1.58
19044--19088
21
2.2
21
84
4
56
35
13
20
31
1.91
20743--20779
19
1.9
19
100
0
74
0
29
0
70
0.88
22550--22588
11
3.6
11
82
3
53
56
0
43
0
0.99
22902--22935
16
2.1
17
88
5
52
64
0
0
35
0.94
31012--31053
20
2.2
19
87
12
59
42
4
0
52
1.22
31090--31127
19
2.0
19
100
0
76
47
15
5
31
1.68
36017--36041
13
1.9
13
100
0
50
36
16
16
32
1.90
37625--37746
39
3.1
39
95
0
208
49
15
6
28
1.70
37891--37944
19
2.8
20
83
5
58
31
14
3
50
1.61
37909--37954
19
2.4
19
85
7
58
30
17
6
45
1.73
45007--45069
23
2.7
24
85
4
85
26
4
3
65
1.28
44930--45046
4
27.8
4
68
14
58
24
4
4
66
1.28
47192--47251
27
2.2
27
90
0
93
21
13
5
60
1.52
47290--47375
18
4.9
17
84
5
118
38
1
5
54
1.32
47290--47375
35
2.5
35
96
0
154
38
1
5
54
1.32
59059--59111
21
2.5
21
93
0
88
24
35
5
33
1.79
60170--60245
20
3.8
20
94
0
125
36
5
26
31
1.79
60729--60789
21
3.0
21
80
2
70
42
18
21
18
1.89
60761--60816
20
2.8
20
88
0
94
42
17
17
21
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61014--61077
22
2.9
22
88
0
101
25
37
14
23
1.92
61252--61319
20
3.4
20
85
0
82
26
20
23
29
1.99
61306--61438
20
6.7
20
90
0
212
23
18
21
36
1.95
61273--61438
60
2.8
59
80
10
144
24
19
21
34
1.96
61435--61489
21
2.5
21
79
5
65
41
14
23
20
1.89
61535--61578
19
2.3
19
100
0
88
25
20
22
31
1.98
68308--68460
60
2.5
60
78
6
166
43
3
19
33
1.70
68747--68827
14
6.8
12
74
25
66
11
12
23
53
1.70
68740--68827
24
3.7
24
95
0
149
11
12
23
52
1.71
68718--68827
48
2.3
48
85
6
143
11
13
23
50
1.74
68740--68840
24
4.2
24
92
0
148
12
11
21
53
1.71
69779--69819
16
2.5
17
80
11
50
12
12
17
58
1.63
69766--69809
22
2.0
22
86
0
61
13
11
18
56
1.66
69890--69922
16
2.1
16
94
0
57
9
12
21
57
1.62
71413--71456
21
2.1
21
100
0
88
40
18
13
27
1.88

Tables:   1

The End!