genome.fa.s1060.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001060.1 Hibiscus syriacus cultivar Beakdansim tig00002095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83074

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1712--1749	18	2.1	18	90	0	58	47	0	15	36	1.46
1872--1954	39	2.1	39	90	0	130	28	6	14	50	1.66
1870--1934	18	3.4	18	70	12	58	30	6	13	49	1.67
11583--11713	4	32.8	4	85	0	172	50	7	24	17	1.72
11813--12092	66	4.3	66	89	0	411	37	13	17	31	1.89
18838--18864	4	6.8	4	100	0	54	51	0	22	25	1.48
18972--19247	65	4.2	65	92	1	428	36	14	18	31	1.90
21192--21307	6	19.3	6	84	0	142	0	55	0	44	0.99
21192--21307	8	14.5	8	82	0	142	0	55	0	44	0.99
21192--21307	10	11.6	10	85	0	142	0	55	0	44	0.99
21192--21307	14	8.3	14	89	0	142	0	55	0	44	0.99
21195--21307	24	4.8	24	92	2	158	0	55	0	44	0.99
23526--23571	23	2.0	24	82	4	58	19	4	10	65	1.41
23710--23754	20	2.3	20	80	3	56	46	4	2	46	1.35
24354--24429	37	2.1	37	97	0	143	32	26	23	17	1.96
28670--28843	76	2.2	77	78	11	187	29	24	12	33	1.92
29393--29425	12	2.6	13	90	4	50	48	0	0	51	1.00
29391--29432	14	3.0	14	86	6	50	50	0	2	47	1.14
31665--31780	9	12.6	9	68	20	53	44	5	4	45	1.45
31696--31794	50	1.9	50	84	11	130	42	3	5	49	1.40
32033--32183	2	75.5	2	65	21	59	46	5	2	45	1.39
32033--32128	13	7.5	13	69	21	60	45	5	3	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32033--32562	20	27.3	19	67	22	152	46	4	4	44	1.43
32044--32191	11	13.5	11	67	18	60	45	5	2	46	1.40
32024--32578	22	26.6	22	68	21	88	46	4	4	44	1.44
32088--32197	53	2.0	55	91	5	179	45	6	1	46	1.39
32047--32197	54	2.8	54	83	5	180	45	5	2	45	1.41
32100--32218	55	2.3	50	78	15	123	45	9	2	42	1.49
32240--32332	11	8.7	11	68	15	61	46	3	4	46	1.38
32284--32335	21	2.4	22	84	9	63	44	3	3	48	1.39
32727--32787	8	8.2	8	74	15	51	54	3	9	32	1.50
32358--32723	2	184.5	2	67	20	146	45	4	3	46	1.40
32754--32792	13	2.9	13	82	17	53	56	0	7	35	1.28
32754--32790	14	2.7	14	84	16	51	56	0	8	35	1.29
33901--33939	14	2.7	15	80	8	53	58	5	15	20	1.55
34721--34770	25	2.0	25	92	0	82	14	14	50	22	1.77
35115--35754	182	3.5	182	91	1	1023	23	16	29	30	1.96
35867--36023	84	1.9	84	87	2	235	24	18	20	36	1.95
36038--36437	84	4.8	84	82	3	454	26	18	21	34	1.96
36038--36437	168	2.4	167	84	3	511	26	18	21	34	1.96
38524--38564	21	2.0	21	90	0	64	31	26	17	24	1.97
38590--38628	19	2.1	19	95	0	69	20	38	15	25	1.92
38546--38754	64	3.2	64	79	9	205	31	25	15	27	1.96
38706--38754	19	2.6	19	84	9	57	24	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44543--44622	24	3.5	22	78	14	92	22	25	23	28	1.99
44523--44645	44	2.8	43	77	10	133	26	26	21	26	1.99
47122--47161	21	1.9	21	94	0	71	32	27	15	25	1.95
49606--49680	14	5.5	14	77	15	68	41	2	1	54	1.23
49613--49676	11	5.9	11	75	8	51	39	3	1	56	1.25
49613--49700	3	30.7	3	73	8	58	40	2	2	54	1.25
60523--60984	55	8.4	55	93	0	755	29	13	24	32	1.94
60523--61058	110	4.9	110	87	3	535	29	13	25	30	1.94
60969--61399	56	7.8	56	85	3	550	33	19	25	22	1.97
61565--61609	20	2.2	20	88	0	63	46	0	0	53	1.00
61584--61655	3	25.0	3	75	8	51	40	1	2	55	1.23
63261--63289	3	9.7	3	100	0	58	0	0	31	68	0.89
64004--64042	17	2.2	17	86	4	51	43	2	2	51	1.29
67620--67658	14	2.7	15	80	8	53	58	5	15	20	1.55
68445--68494	25	2.0	25	92	0	82	16	10	50	24	1.75
69217--69257	6	7.0	6	78	15	50	2	17	0	80	0.82
69213--69256	18	2.4	18	96	0	79	2	15	0	81	0.78
70291--70321	15	2.1	15	100	0	62	29	6	6	58	1.48
76741--76942	65	3.1	64	76	12	216	27	16	23	32	1.96
77283--77348	21	3.4	21	66	20	61	21	43	0	34	1.53
77279--77355	37	2.1	37	97	0	145	27	37	0	35	1.57

Tables:   1

The End!