genome.fa.s1061.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001061.1 Hibiscus syriacus cultivar Beakdansim tig00002098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160210

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784--1833	20	2.5	20	80	12	57	42	0	2	56	1.11
1822--1898	27	2.9	26	86	5	118	42	0	2	54	1.14
1829--1894	16	4.3	16	69	21	52	43	0	3	53	1.16
1826--1901	18	4.3	17	70	20	57	44	0	2	52	1.14
4051--4122	31	2.3	31	87	0	99	34	11	15	38	1.83
4256--4378	62	2.0	61	96	1	228	44	22	15	17	1.86
18518--18629	21	5.3	21	69	16	97	20	18	23	37	1.94
18499--18634	42	3.2	42	93	0	227	21	16	24	38	1.93
19417--19550	19	6.5	19	74	16	115	38	23	17	20	1.93
19443--19506	23	3.0	22	75	13	71	42	20	15	21	1.89
19429--19541	42	2.6	42	85	2	145	38	22	17	21	1.93
19575--19618	21	2.1	21	91	0	70	18	20	34	27	1.96
24172--24238	30	2.2	30	97	0	125	23	16	26	32	1.96
26775--26799	11	2.3	11	100	0	50	36	0	0	64	0.94
26780--26844	28	2.4	28	84	7	89	32	3	1	63	1.19
33064--33103	2	20.0	2	89	0	62	45	0	0	55	0.99
37839--37874	18	2.1	18	89	5	56	41	5	2	50	1.40
41270--41325	21	2.7	21	70	10	60	41	5	16	37	1.71
41439--41496	29	2.0	29	87	12	84	32	0	1	65	1.03
41955--42072	50	2.4	51	79	4	132	17	31	27	22	1.97
42237--42277	18	2.3	18	91	4	66	29	4	2	63	1.28
44303--44347	23	2.0	23	86	0	63	26	28	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44328--44629	149	2.0	149	96	0	559	34	19	17	28	1.94
45442--45476	18	1.9	18	88	11	54	22	17	5	54	1.64
46055--46099	21	2.1	21	87	0	63	15	24	28	31	1.96
48357--48401	23	2.0	23	86	0	63	26	28	24	20	1.99
48382--48683	149	2.0	149	96	0	550	34	19	17	28	1.94
49492--49526	18	1.9	18	88	11	54	22	17	5	54	1.64
50098--50142	21	2.1	21	91	0	72	15	22	28	33	1.95
55144--55268	50	2.5	51	80	7	139	22	26	33	17	1.96
69314--69396	32	2.6	32	83	5	98	16	14	30	38	1.89
70703--70766	32	2.0	33	84	9	87	12	10	34	42	1.78
81086--81112	6	4.5	6	100	0	54	18	51	0	29	1.46
85557--85585	15	1.9	15	100	0	58	55	6	3	34	1.44
91505--91587	31	2.7	31	78	14	91	50	8	3	37	1.50
93544--93581	2	19.0	2	94	0	67	47	0	0	52	1.00
101306--101351	23	2.0	23	91	0	74	28	26	23	21	1.99
101329--101634	149	2.0	151	97	1	589	35	20	15	28	1.93
102090--102248	63	2.5	63	86	2	203	27	21	18	32	1.97
108322--108367	23	2.0	23	91	0	74	28	26	23	21	1.99
108345--108645	146	2.0	149	96	2	563	35	21	15	27	1.93
109100--109258	63	2.5	63	83	2	185	27	20	18	32	1.97
111299--111371	30	2.4	30	93	0	119	30	23	19	27	1.98
111314--111398	30	2.8	30	87	1	107	32	24	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111376--111483	33	3.5	30	75	18	105	34	17	19	28	1.95
111552--111587	17	2.1	17	100	0	72	36	25	0	38	1.56
112820--112863	21	2.2	20	87	4	61	15	25	27	31	1.96
116146--116218	30	2.4	30	93	0	119	30	23	20	26	1.99
116204--116331	31	4.1	31	76	6	116	34	20	17	27	1.95
117664--117703	21	1.9	21	84	0	53	20	20	30	30	1.97
135584--135666	3	27.7	3	81	13	55	44	0	0	55	0.99
137040--137082	18	2.4	18	100	0	86	51	0	0	48	1.00
137194--137253	29	2.1	29	84	6	77	48	1	0	50	1.11
141469--141500	12	2.7	12	90	0	55	65	0	15	18	1.27
154949--155019	35	2.1	35	92	5	119	30	11	15	42	1.82
158797--158868	30	2.4	30	90	0	108	31	22	20	25	1.98

Tables:   1

The End!