Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001062.1 Hibiscus syriacus cultivar Beakdansim tig00002099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 178865
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Found at i:415 original size:18 final size:19
Alignment explanation
Indices: 382--435 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
372 TGACCGCAAT
* *
382 CGTGATCGTGACAGGGA-A
1 CGTGATCGAGATAGGGATA
400 CGTGATCGAGATAGGGATA
1 CGTGATCGAGATAGGGATA
* *
419 -GAGATAGAGATAGGGAT
1 CGTGATCGAGATAGGGAT
436 CGATATAGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 30 0.97
19 1 0.03
ACGTcount: A:0.33, C:0.09, G:0.39, T:0.19
Consensus pattern (19 bp):
CGTGATCGAGATAGGGATA
Found at i:7834 original size:28 final size:27
Alignment explanation
Indices: 7766--7855 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 27
7756 AAATTTTTTT
* **
7766 AAAAAACCATGAAATTATTAAAATTTCA
1 AAAAAACCCT-AAATTCCTAAAATTTCA
*
7794 AAAAAACCTTAAATTCCATAAAATTT-A
1 AAAAAACCCTAAATTCC-TAAAATTTCA
*
7821 AAAAAACTCCTAAATTCCTAAAAATTCCA
1 AAAAAAC-CCTAAATTCCT-AAAATTTCA
7850 AAAAAA
1 AAAAAA
7856 TTTAGGGAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
27 14 0.26
28 32 0.60
29 7 0.13
ACGTcount: A:0.58, C:0.16, G:0.01, T:0.26
Consensus pattern (27 bp):
AAAAAACCCTAAATTCCTAAAATTTCA
Found at i:13081 original size:35 final size:34
Alignment explanation
Indices: 13042--13129 Score: 88
Period size: 35 Copynumber: 2.6 Consensus size: 34
13032 AAATGGTAAT
* ***
13042 AACAAAATTAACCAAAATGCATTAACAA-AAAGTCC
1 AACAAAATTAACAAAAAAAAATTAA-AATAAA-TCC
*
13077 AACAAATTTAACAAAAAAAAATTAAAATAAATCC
1 AACAAAATTAACAAAAAAAAATTAAAATAAATCC
* *
13111 AACCAAATTAACGAAAAAA
1 AACAAAATTAACAAAAAAA
13130 TAAGTATTAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
34 21 0.48
35 23 0.52
ACGTcount: A:0.64, C:0.16, G:0.03, T:0.17
Consensus pattern (34 bp):
AACAAAATTAACAAAAAAAAATTAAAATAAATCC
Found at i:13835 original size:13 final size:13
Alignment explanation
Indices: 13817--13850 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
13807 AAACTTGAGG
13817 TTTGATTCTTCTC
1 TTTGATTCTTCTC
13830 TTTGATTC-TCTC
1 TTTGATTCTTCTC
13842 -TTGATTCTT
1 TTTGATTCTT
13851 GTTTCTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 7 0.35
12 5 0.25
13 8 0.40
ACGTcount: A:0.09, C:0.21, G:0.09, T:0.62
Consensus pattern (13 bp):
TTTGATTCTTCTC
Found at i:13847 original size:11 final size:12
Alignment explanation
Indices: 13817--13849 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
13807 AAACTTGAGG
13817 TTTGATTCTTCTC
1 TTTGATTC-TCTC
13830 TTTGATTCTCTC
1 TTTGATTCTCTC
13842 -TTGATTCT
1 TTTGATTCT
13850 TGTTTCTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 4 0.20
13 8 0.40
ACGTcount: A:0.09, C:0.21, G:0.09, T:0.61
Consensus pattern (12 bp):
TTTGATTCTCTC
Found at i:16983 original size:24 final size:21
Alignment explanation
Indices: 16928--16986 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
16918 GCATGACCTT
* *
16928 GTGCATCGATGCACCTTCATG
1 GTGCATCGATGCACATTCAGG
*
16949 GTGTATCGATGCACATTCAAAGG
1 GTGCATCGATGCACATTC--AGG
16972 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
16987 TGTTAAGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 16 0.52
23 3 0.10
24 12 0.39
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (21 bp):
GTGCATCGATGCACATTCAGG
Found at i:22612 original size:64 final size:64
Alignment explanation
Indices: 22544--22727 Score: 200
Period size: 64 Copynumber: 2.9 Consensus size: 64
22534 TTTGACCCTT
* * *
22544 AGTGCATCGGTGCACTAAGAGTGCATCGATGCATAAAATGCATTCAATGTTTCAA-AATAGC-CT
1 AGTGCATCGATGCACT-AGAGTGCATCGATGCATAAAATGCATTCGATGTTTCAATAA-AACTCT
22607 G
64 G
* *
22608 AGTGCATCGATGCATGGCT-G-GTGCATCGATGCATCAAATGCATTCGATGTTTTAATAAAACTC
1 AGTGCATCGATGCA---CTAGAGTGCATCGATGCATAAAATGCATTCGATGTTTCAATAAAACTC
22671 TG
63 TG
* *
22673 AGTGCATCGATGCA-TAGTATGTGCATCGGTGCATGAAATGCATTCGATG-TTCAAT
1 AGTGCATCGATGCACTAG-A-GTGCATCGATGCATAAAATGCATTCGATGTTTCAAT
22728 TTATTCCATG
Statistics
Matches: 103, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
61 1 0.01
62 1 0.01
64 52 0.50
65 47 0.46
67 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (64 bp):
AGTGCATCGATGCACTAGAGTGCATCGATGCATAAAATGCATTCGATGTTTCAATAAAACTCTG
Found at i:22706 original size:65 final size:64
Alignment explanation
Indices: 22564--22723 Score: 207
Period size: 65 Copynumber: 2.5 Consensus size: 64
22554 TGCACTAAGA
* * *
22564 GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAACCTGAGTGCATCGATGCATAGCTG
* *
22628 GTGCATCGATGCATCAAATGCATTCGATGTTTTAATAA-AACTCTGAGTGCATCGATGCATAG-T
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAA-AATAAC-CTGAGTGCATCGATGCATAGCT
*
22691 AT
64 -G
* *
22693 GTGCATCGGTGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATAAAATGCATTCGATGTT
22724 CAATTTATTC
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
64 35 0.41
65 50 0.59
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAAAATAACCTGAGTGCATCGATGCATAGCTG
Found at i:22762 original size:65 final size:63
Alignment explanation
Indices: 22564--22764 Score: 201
Period size: 65 Copynumber: 3.1 Consensus size: 63
22554 TGCACTAAGA
* * * *
22564 GTGCATCGATGCATAAAATGCATTCAATGTTTCAAAATAGCCTGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATAAAATGCATTCGATGTTTC-AATTAACCTGAGTGCATCGATGCATGGTTG
* * * *
22628 GTGCATCGATGCATCAAATGCATTCGATGTTTTAATAAAACTCTGAGTGCATCGATGCATAGTAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAAT-TAAC-CTGAGTGCATCGATGCATGGT-T
22693 -
63 G
* * * *
22693 GTGCATCGGTGCATGAAATGCATTCGATG-TTCAATTTATTCCATG-GTGCATTGATGCATGGAT
1 GTGCATCGATGCATAAAATGCATTCGATGTTTCAA-TTA-ACC-TGAGTGCATCGATGCATGG-T
22756 TG
62 TG
22758 GTGCATC
1 GTGCATC
22765 AGTGCATTAG
Statistics
Matches: 114, Mismatches: 15, Indels: 15
0.79 0.10 0.10
Matches are distributed among these distances:
63 2 0.02
64 53 0.46
65 58 0.51
66 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (63 bp):
GTGCATCGATGCATAAAATGCATTCGATGTTTCAATTAACCTGAGTGCATCGATGCATGGTTG
Found at i:23850 original size:2 final size:2
Alignment explanation
Indices: 23843--23869 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23833 ACTAAAACAA
23843 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
23870 ATTTTTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25054 original size:30 final size:31
Alignment explanation
Indices: 25003--25063 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
24993 AAATAATTAA
** *
25003 TTAAATAAAATATTAAAAAAAT-TTAAATAT
1 TTAAATAAAATAACAAAAAAATAGTAAATAT
25033 TTAAAT-AAATAACAAACAAAATAGTAAATAT
1 TTAAATAAAATAACAAA-AAAATAGTAAATAT
25064 AATAAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 8 0.31
30 11 0.42
31 7 0.27
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (31 bp):
TTAAATAAAATAACAAAAAAATAGTAAATAT
Found at i:25832 original size:13 final size:14
Alignment explanation
Indices: 25816--25877 Score: 69
Period size: 13 Copynumber: 4.6 Consensus size: 14
25806 CCCGCCCGAC
25816 TTTCCCGCC-ATCG
1 TTTCCCGCCTATCG
*
25829 TTTCCCGCCTTTC-
1 TTTCCCGCCTATCG
25842 TATTCCCGCCTAT-G
1 T-TTCCCGCCTATCG
*
25856 TTTCCCGTC-ATCG
1 TTTCCCGCCTATCG
25869 TTTCCCGCC
1 TTTCCCGCC
25878 CTCCCATCCC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
12 2 0.05
13 26 0.63
14 13 0.32
ACGTcount: A:0.06, C:0.44, G:0.13, T:0.37
Consensus pattern (14 bp):
TTTCCCGCCTATCG
Found at i:29455 original size:8 final size:8
Alignment explanation
Indices: 29406--29494 Score: 70
Period size: 8 Copynumber: 11.1 Consensus size: 8
29396 TATGAACCAT
*
29406 TTTGAGAA
1 TTTGAGAG
*
29414 TTTCAGAG
1 TTTGAGAG
*
29422 TTTGAAAG
1 TTTGAGAG
29430 TTTGAGAG
1 TTTGAGAG
*
29438 TTTGATAG
1 TTTGAGAG
*
29446 TTTCAGAG
1 TTTGAGAG
*
29454 TTAGAGAG
1 TTTGAGAG
** *
29462 TTCAAGAA
1 TTTGAGAG
*
29470 TTTAAGAG
1 TTTGAGAG
*
29478 TTTAAGAG
1 TTTGAGAG
*
29486 ATTGAGAG
1 TTTGAGAG
29494 T
1 T
29495 CGGGGAATTA
Statistics
Matches: 63, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
8 63 1.00
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (8 bp):
TTTGAGAG
Found at i:29463 original size:16 final size:16
Alignment explanation
Indices: 29406--29494 Score: 81
Period size: 16 Copynumber: 5.6 Consensus size: 16
29396 TATGAACCAT
*
29406 TTTGAGAATTTCAGAG
1 TTTGAGAGTTTCAGAG
* *
29422 TTTGAAAGTTTGAGAG
1 TTTGAGAGTTTCAGAG
*
29438 TTTGATAGTTTCAGAG
1 TTTGAGAGTTTCAGAG
* *
29454 TTAGAGAG-TTCAAGAA
1 TTTGAGAGTTTC-AGAG
* *
29470 TTTAAGAGTTTAAGAG
1 TTTGAGAGTTTCAGAG
*
29486 ATTGAGAGT
1 TTTGAGAGT
29495 CGGGGAATTA
Statistics
Matches: 57, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
15 3 0.05
16 52 0.91
17 2 0.04
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (16 bp):
TTTGAGAGTTTCAGAG
Found at i:36718 original size:19 final size:19
Alignment explanation
Indices: 36694--36737 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
36684 TTGCTTATCT
36694 AGCTGGGTTCGAGCCATCA
1 AGCTGGGTTCGAGCCATCA
36713 AGCTGGGTTCGAGCCATCA
1 AGCTGGGTTCGAGCCATCA
36732 AGCTGG
1 AGCTGG
36738 ATCCGACAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.20, C:0.25, G:0.34, T:0.20
Consensus pattern (19 bp):
AGCTGGGTTCGAGCCATCA
Found at i:39492 original size:42 final size:41
Alignment explanation
Indices: 39412--39528 Score: 110
Period size: 42 Copynumber: 2.8 Consensus size: 41
39402 GAGAAGGGGT
* * * * *
39412 GGAGGAGGGGCACTAGGCATCAAT-GGGAATAGTTGAGGTGGA
1 GGAGGAGGGGCACTAGAC-TCAATAGGG-GTGGTGGAGGTGAA
39454 GGAGGAGGGGCACTAGACTTCAATAGGGGTGGTGGAGGTGAA
1 GGAGGAGGGGCACTAGAC-TCAATAGGGGTGGTGGAGGTGAA
* * *
39496 GGAGGTGGGACACCAGACTCAATGAGGCGGTGG
1 GGAGGAGGGGCACTAGACTCAAT-AGG-GGTGG
39529 AGATAGAGGT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
41 5 0.08
42 50 0.79
43 8 0.13
ACGTcount: A:0.26, C:0.12, G:0.46, T:0.15
Consensus pattern (41 bp):
GGAGGAGGGGCACTAGACTCAATAGGGGTGGTGGAGGTGAA
Found at i:45852 original size:22 final size:23
Alignment explanation
Indices: 45827--45869 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
45817 AAGTATAATG
45827 AGAAAAAAGAT-TATGAAGAAAA
1 AGAAAAAAGATGTATGAAGAAAA
* *
45849 AGAAGAAAGTTGTATGAAGAA
1 AGAAAAAAGATGTATGAAGAA
45870 TATTTTGGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.16
Consensus pattern (23 bp):
AGAAAAAAGATGTATGAAGAAAA
Found at i:51751 original size:16 final size:18
Alignment explanation
Indices: 51704--51753 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
51694 AGAATGTTTA
51704 TGAGGGAATTGGAATCTG
1 TGAGGGAATTGGAATCTG
51722 TGAGGGAATTGGAATCTG
1 TGAGGGAATTGGAATCTG
*
51740 T-A-GGATTTGGAATC
1 TGAGGGAATTGGAATC
51754 CAATTCCATA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 11 0.35
17 1 0.03
18 19 0.61
ACGTcount: A:0.28, C:0.06, G:0.36, T:0.30
Consensus pattern (18 bp):
TGAGGGAATTGGAATCTG
Found at i:51796 original size:44 final size:44
Alignment explanation
Indices: 51746--51863 Score: 218
Period size: 44 Copynumber: 2.7 Consensus size: 44
51736 TCTGTAGGAT
*
51746 TTGGAATCCAATTCCATATTCTGTTTGGTTGGCAGGAAATGGAA
1 TTGGAATCCAATTCCATATTTTGTTTGGTTGGCAGGAAATGGAA
*
51790 TTGGAATCCAATTCCATATTTTGTTTAGTTGGCAGGAAATGGAA
1 TTGGAATCCAATTCCATATTTTGTTTGGTTGGCAGGAAATGGAA
51834 TTGGAATCCAATTCCATATTTTGTTTGGTT
1 TTGGAATCCAATTCCATATTTTGTTTGGTT
51864 CGCATACATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (44 bp):
TTGGAATCCAATTCCATATTTTGTTTGGTTGGCAGGAAATGGAA
Found at i:52438 original size:35 final size:37
Alignment explanation
Indices: 52372--52441 Score: 117
Period size: 35 Copynumber: 1.9 Consensus size: 37
52362 AACCCACCCC
*
52372 CGACCCGAATATCATACTTAAAAAACCCGACCCGACT
1 CGACCCGAATATCACACTTAAAAAACCCGACCCGACT
52409 CGACCCG-ATATCACACTT-AAAAACCCGACCCGA
1 CGACCCGAATATCACACTTAAAAAACCCGACCCGA
52442 ACAAAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 15 0.47
36 10 0.31
37 7 0.22
ACGTcount: A:0.37, C:0.37, G:0.11, T:0.14
Consensus pattern (37 bp):
CGACCCGAATATCACACTTAAAAAACCCGACCCGACT
Found at i:53226 original size:16 final size:18
Alignment explanation
Indices: 53192--53227 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
53182 TATAAAATAA
53192 AACTCGAAAAATTTGAAT
1 AACTCGAAAAATTTGAAT
53210 AACTC-AAAAATTT-AAT
1 AACTCGAAAAATTTGAAT
53226 AA
1 AA
53228 TTAGTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 8 0.44
18 5 0.28
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.28
Consensus pattern (18 bp):
AACTCGAAAAATTTGAAT
Found at i:54054 original size:76 final size:77
Alignment explanation
Indices: 53928--54082 Score: 287
Period size: 76 Copynumber: 2.0 Consensus size: 77
53918 GCATGTTTTT
53928 TTCACATCAGCATCTCATGCAAAAATGTGAATATAAATAGGCTTATTTAAAGGATGAAACCCT-A
1 TTCACATCAGCATCTCATGCAAAAATGTGAATATAAATAGGCTTATTTAAAGGATGAAACCCTAA
53992 AATCTAAAAGGG
66 AATCTAAAAGGG
54004 TTCACATCAGCATCTCATGCAAAAATGTGGAATAT-AATAGGCTTATTTAAAGGATGAAACCCTA
1 TTCACATCAGCATCTCATGCAAAAATGT-GAATATAAATAGGCTTATTTAAAGGATGAAACCCTA
54068 AAATCTAAAAGGG
65 AAATCTAAAAGGG
54081 TT
1 TT
54083 TCTTATTCTT
Statistics
Matches: 77, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
76 56 0.73
77 21 0.27
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (77 bp):
TTCACATCAGCATCTCATGCAAAAATGTGAATATAAATAGGCTTATTTAAAGGATGAAACCCTAA
AATCTAAAAGGG
Found at i:56042 original size:2 final size:2
Alignment explanation
Indices: 56035--56068 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
56025 ATAAGAAATA
*
56035 AT AT AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
56069 GACTAAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:56556 original size:31 final size:31
Alignment explanation
Indices: 56464--56661 Score: 276
Period size: 31 Copynumber: 6.5 Consensus size: 31
56454 GAGTCGAGGG
* *
56464 TTACCTATATTCTT-GGGACATATGGATTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
56494 TTGCCTATGTTCTTC-GGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* * *
56524 TTACCTATGTTCTTCGAGACATGTGGATTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
56555 TTACCTATGTTCTTTGGGAAATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
56586 TTACCTATGTTCTTCGGGACATATGGACTGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
*
56617 TTACCTATGTTCTTCGGGACATATAGA-TGT
1 TTACCTATGTTCTTCGGGACATATGGACTGT
* *
56647 TTATCTAGGTTCTTC
1 TTACCTATGTTCTTC
56662 AGAATCTATT
Statistics
Matches: 149, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
30 56 0.38
31 93 0.62
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (31 bp):
TTACCTATGTTCTTCGGGACATATGGACTGT
Found at i:56883 original size:31 final size:31
Alignment explanation
Indices: 56848--56948 Score: 136
Period size: 31 Copynumber: 3.3 Consensus size: 31
56838 TATATATGTT
56848 ACAGATTACCTATGTTCTTCTAGACATATGG
1 ACAGATTACCTATGTTCTTCTAGACATATGG
*
56879 ACAGATTACCTATGTTCTT-TGGGACATATGG
1 ACAGATTACCTATGTTCTTCT-AGACATATGG
56910 ACATG-TTACCTATGTTCTTC-AGGACATATGG
1 ACA-GATTACCTATGTTCTTCTA-GACATATGG
*
56941 ATAGATTA
1 ACAGATTA
56949 TTATATAAGC
Statistics
Matches: 62, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
30 2 0.03
31 59 0.95
32 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (31 bp):
ACAGATTACCTATGTTCTTCTAGACATATGG
Found at i:60579 original size:33 final size:33
Alignment explanation
Indices: 60532--60596 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
60522 CCGTGAACAG
* *
60532 TACCGTGAATAGTGTATTGATGCACTGTTACAT
1 TACCGTGAACAGTGTATCGATGCACTGTTACAT
60565 TACCGTGAACAGTGTATCGATGCACTGTTACA
1 TACCGTGAACAGTGTATCGATGCACTGTTACA
60597 GTGTACCGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (33 bp):
TACCGTGAACAGTGTATCGATGCACTGTTACAT
Found at i:60599 original size:21 final size:21
Alignment explanation
Indices: 60573--60617 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
60563 ATTACCGTGA
* *
60573 ACAGTGTATCGATGCACTGTT
1 ACAGTGTACCGATGCACTGCT
60594 ACAGTGTACCGATGCACTGCT
1 ACAGTGTACCGATGCACTGCT
60615 ACA
1 ACA
60618 TTTTTTTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (21 bp):
ACAGTGTACCGATGCACTGCT
Found at i:61738 original size:44 final size:45
Alignment explanation
Indices: 61511--61780 Score: 472
Period size: 45 Copynumber: 6.0 Consensus size: 45
61501 ATAACATTTC
* *
61511 TTACCAATATACTAACCATTTAATCTCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATTC-CATAAGCTCGTAAGCTTATT
*
61557 TTACCAATATACTTATCATTTATTCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
*
61602 TTACCAATATACTTACTATTTATTCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
61647 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
61692 TTACCAATATACTTACCATTTATTCCA-AAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
*
61736 TTACCAATATACTTGCCA-TTATTCCATAAGCTCGTAAGCTTATT
1 TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
61780 T
1 T
61781 GCATACTTAC
Statistics
Matches: 216, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
43 8 0.04
44 52 0.24
45 134 0.62
46 22 0.10
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.40
Consensus pattern (45 bp):
TTACCAATATACTTACCATTTATTCCATAAGCTCGTAAGCTTATT
Found at i:64708 original size:24 final size:24
Alignment explanation
Indices: 64671--64743 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
64661 TGCCACATAG
* *
64671 ATTTATCCCAAAGGACCGCGTAGA
1 ATTTGTCCCGAAGGACCGCGTAGA
* * *
64695 ATTTGTCTCGAAGGACCACATAGA
1 ATTTGTCCCGAAGGACCGCGTAGA
64719 ATTTGTCCCGAAGGACCGCGTAGA
1 ATTTGTCCCGAAGGACCGCGTAGA
64743 A
1 A
64744 CCCTCGACTC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (24 bp):
ATTTGTCCCGAAGGACCGCGTAGA
Found at i:69411 original size:35 final size:36
Alignment explanation
Indices: 69334--69411 Score: 122
Period size: 36 Copynumber: 2.2 Consensus size: 36
69324 TCGAGTTTAT
* *
69334 AAAATTATAAATCGAAATCAATTGCAAATCTAATAA
1 AAAATTATAAATCAAAATCAATTGCAAATCGAATAA
*
69370 AAAATTATAAATCAAAATCAATT-CATATCGAATAA
1 AAAATTATAAATCAAAATCAATTGCAAATCGAATAA
69405 AAAATTA
1 AAAATTA
69412 ATTTTTTGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 17 0.44
36 22 0.56
ACGTcount: A:0.58, C:0.10, G:0.04, T:0.28
Consensus pattern (36 bp):
AAAATTATAAATCAAAATCAATTGCAAATCGAATAA
Found at i:71863 original size:21 final size:21
Alignment explanation
Indices: 71837--71883 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
71827 ACAAAAGGAT
71837 AATCAGAATCCATTTGCAGAA
1 AATCAGAATCCATTTGCAGAA
71858 AATCAGAATCCATTTGCAGAA
1 AATCAGAATCCATTTGCAGAA
71879 AATCA
1 AATCA
71884 TCAGACAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.45, C:0.19, G:0.13, T:0.23
Consensus pattern (21 bp):
AATCAGAATCCATTTGCAGAA
Found at i:71928 original size:22 final size:23
Alignment explanation
Indices: 71898--71950 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
71888 ACAGATCTTT
71898 AAAATGAAAAAA-AATAGAGATTG
1 AAAA-GAAAAAACAATAGAGATTG
*
71921 AAAAGAAAAAACAATATAGATTG
1 AAAAGAAAAAACAATAGAGATTG
71944 AAAAGAA
1 AAAAGAA
71951 GGTGGCCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (23 bp):
AAAAGAAAAAACAATAGAGATTG
Found at i:80728 original size:3 final size:3
Alignment explanation
Indices: 80720--80806 Score: 174
Period size: 3 Copynumber: 29.0 Consensus size: 3
80710 TCTCTTAGTG
80720 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80768 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80807 TTGCATATAC
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:82730 original size:11 final size:11
Alignment explanation
Indices: 82711--82742 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
82701 AATGGTTCAA
82711 TCCAAAAGCAT
1 TCCAAAAGCAT
*
82722 TCGAAAAGCAT
1 TCCAAAAGCAT
82733 TCCAAAAGCA
1 TCCAAAAGCA
82743 CTTAACATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.47, C:0.25, G:0.12, T:0.16
Consensus pattern (11 bp):
TCCAAAAGCAT
Found at i:83574 original size:24 final size:21
Alignment explanation
Indices: 83546--83603 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 21
83536 TTTTATTTTT
*
83546 TTTATTTTTTTTCTCTTAATATT
1 TTTATTTTTTTTCTC--AATATA
83569 TGTTATTGTTATTTTCTCAATATA
1 T-TTATT-TT-TTTTCTCAATATA
83593 TTTATTTTTTT
1 TTTATTTTTTT
83604 CCATCTCTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
21 3 0.10
22 2 0.06
23 6 0.19
24 11 0.35
25 2 0.06
26 7 0.23
ACGTcount: A:0.19, C:0.07, G:0.03, T:0.71
Consensus pattern (21 bp):
TTTATTTTTTTTCTCAATATA
Found at i:87420 original size:106 final size:106
Alignment explanation
Indices: 87239--89196 Score: 3341
Period size: 106 Copynumber: 18.5 Consensus size: 106
87229 CTCAATCAAC
* *
87239 TTCTCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
87304 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAC
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
* *
87345 TTCTCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
87410 CAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAAC-AT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
* * *
87450 CTTCTCAATTTTTAGAGCCAATTTCAACTTCACATCGAAGGATATTGGACTCCAGACAACGCAAG
1 -TTCTCAA-TTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAG
*
87515 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAAT
64 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
* * * * *
87558 TT-TCCAA-TTCTAGAGTCAATTTCAACTTCACAGCGAAGGATAATGGACTCCAGACAACGTAAG
1 TTCT-CAATTTC-AGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAG
*
87621 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAC
64 TTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
87664 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
87729 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
* * * * *
87770 TTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
87835 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAC
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
87876 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
87941 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
87982 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
88047 CAACTTCACGACGAATGGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
88088 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
88153 CAACTTCACGACGAA-GGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
88193 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
88258 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAC
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
* *
88299 TTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
88364 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
* ** * * * *
88405 TTCCCAATTTTGGAGCCAATTTTAAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGT
1 TTCTCAATTTCAGAGCCAA-TTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGT
* * *
88470 TCAACTTCACGACGAAGGGACTGCCGGTTGTCAACAAACAAC
65 TCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
88512 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
88577 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
* * * * *
88618 TTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
88683 TAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
88724 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
88789 CAACTTCACGACGAAGGGACCGCTGGTTGTCACCAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
*
88830 TTCTCAATTTCAGAGCCAATTTCAACTTCAAAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
88895 CAACTTCACGACGAATGGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
*
88936 TTATCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
*
89001 CAACTTCACGACGAATGGACCGCTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
89042 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
89107 CAACTTCACGACGAAGGGA-CGACTGGTTGTCAACAAACAAT
66 CAACTTCACGACGAAGGGACCG-CTGGTTGTCAACAAACAAT
* * * * ** *
89148 TTCCCAGTTCCAAAGCCAATTTCAACTTCATGACGGAGGATATTGGACT
1 TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
89197 TGGAACAATA
Statistics
Matches: 1763, Mismatches: 79, Indels: 20
0.95 0.04 0.01
Matches are distributed among these distances:
105 110 0.06
106 1451 0.82
107 200 0.11
108 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (106 bp):
TTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTT
CAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAT
Found at i:90377 original size:11 final size:11
Alignment explanation
Indices: 90358--90389 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
90348 AATGGTTCAA
90358 TCCAAAAGCAT
1 TCCAAAAGCAT
*
90369 TCGAAAAGCAT
1 TCCAAAAGCAT
90380 TCCAAAAGCA
1 TCCAAAAGCA
90390 CTTAACATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.47, C:0.25, G:0.12, T:0.16
Consensus pattern (11 bp):
TCCAAAAGCAT
Found at i:91228 original size:24 final size:21
Alignment explanation
Indices: 91200--91256 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
91190 TTTTATTTTT
*
91200 TTTATTTTTTTTCTCTTAATATT
1 TTTATTTTTTTTCTC--AATATA
91223 TGTTATTGTTATTTTCTCAATATA
1 T-TTATT-TT-TTTTCTCAATATA
91247 TTTATTTTTT
1 TTTATTTTTT
91257 CCATCTCTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
21 2 0.07
22 2 0.07
23 6 0.20
24 11 0.37
25 2 0.07
26 7 0.23
ACGTcount: A:0.19, C:0.07, G:0.04, T:0.70
Consensus pattern (21 bp):
TTTATTTTTTTTCTCAATATA
Found at i:93058 original size:23 final size:23
Alignment explanation
Indices: 93032--93075 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
93022 ACACAACACA
93032 AAAATAACATGAA-AAAAATATTT
1 AAAATAA-ATGAATAAAAATATTT
*
93055 AAAATAAATTAATAAAAATAT
1 AAAATAAATGAATAAAAATAT
93076 GAAATTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAATGAATAAAAATATTT
Found at i:94123 original size:31 final size:31
Alignment explanation
Indices: 94085--94150 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
94075 TTATTTCATG
94085 TTAGTATCTCATCTTTAAAAACTTAACTCTA
1 TTAGTATCTCATCTTTAAAAACTTAACTCTA
94116 TTAGTATCTCATCTTTAAAAACTTAACTCTA
1 TTAGTATCTCATCTTTAAAAACTTAACTCTA
94147 TTAG
1 TTAG
94151 CACCTAAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42
Consensus pattern (31 bp):
TTAGTATCTCATCTTTAAAAACTTAACTCTA
Found at i:98016 original size:10 final size:10
Alignment explanation
Indices: 98001--98028 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
97991 TCCGGTGTTT
98001 AAATTTTCTA
1 AAATTTTCTA
98011 AAATTTTCTA
1 AAATTTTCTA
98021 AAATTTTC
1 AAATTTTC
98029 CATCTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (10 bp):
AAATTTTCTA
Found at i:104127 original size:3 final size:3
Alignment explanation
Indices: 104119--104172 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
104109 TCTCTTAGTG
104119 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
104167 ATT ATT
1 ATT ATT
104173 TTGCATATAC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:107022 original size:23 final size:23
Alignment explanation
Indices: 106996--107039 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
106986 ACACAACACA
106996 AAAATAACATGAA-AAAAATATTT
1 AAAATAA-ATGAATAAAAATATTT
*
107019 AAAATAAATTAATAAAAATAT
1 AAAATAAATGAATAAAAATAT
107040 GAAATTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAATGAATAAAAATATTT
Found at i:107455 original size:2 final size:2
Alignment explanation
Indices: 107448--107474 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107438 TTTGAACTAA
107448 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
107475 ATTCATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:111950 original size:11 final size:11
Alignment explanation
Indices: 111934--111962 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
111924 TCCGGTGTTT
111934 AAATTTTTCTA
1 AAATTTTTCTA
111945 AAATTTTTCTA
1 AAATTTTTCTA
111956 AAATTTT
1 AAATTTT
111963 CCATCTGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (11 bp):
AAATTTTTCTA
Found at i:118058 original size:3 final size:3
Alignment explanation
Indices: 118050--118112 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
118040 TCTCTTAGTG
118050 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
118098 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
118113 TTGCATATAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:120972 original size:23 final size:23
Alignment explanation
Indices: 120946--120989 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
120936 ACACAACACA
120946 AAAATAACATGAA-AAAAATATTT
1 AAAATAA-ATGAATAAAAATATTT
*
120969 AAAATAAATTAATAAAAATAT
1 AAAATAAATGAATAAAAATAT
120990 GAAATTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAATGAATAAAAATATTT
Found at i:125924 original size:10 final size:11
Alignment explanation
Indices: 125893--125923 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
125883 ACTCCGGTGT
125893 TTAAATTTTTC
1 TTAAATTTTTC
125904 TTAAATTTTTC
1 TTAAATTTTTC
*
125915 TAAAATTTT
1 TTAAATTTT
125924 CCGTCTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (11 bp):
TTAAATTTTTC
Found at i:130275 original size:2 final size:2
Alignment explanation
Indices: 130201--130258 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
130191 GAGAAAACAA
130201 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130243 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
130259 TAAAGCAAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:132989 original size:14 final size:14
Alignment explanation
Indices: 132970--133018 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
132960 GCAATAATGT
132970 ATATTATAAAAATA
1 ATATTATAAAAATA
*
132984 ATATTAATCAAAAGTA
1 ATATT-AT-AAAAATA
133000 A-ATTATAAAAATA
1 ATATTATAAAAATA
133013 ATATTA
1 ATATTA
133019 ATCAAAAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 7 0.23
14 11 0.37
15 5 0.17
16 7 0.23
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
ATATTATAAAAATA
Found at i:133004 original size:15 final size:16
Alignment explanation
Indices: 132977--133026 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
132967 TGTATATTAT
*
132977 AAAAATAATATTAATC
1 AAAAGTAATATTAATC
132993 AAAAGTAA-ATT-AT-
1 AAAAGTAATATTAATC
*
133006 AAAAATAATATTAATC
1 AAAAGTAATATTAATC
133022 AAAAG
1 AAAAG
133027 GGACGAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 7 0.25
14 5 0.18
15 5 0.18
16 11 0.39
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (16 bp):
AAAAGTAATATTAATC
Found at i:133886 original size:106 final size:106
Alignment explanation
Indices: 133597--134939 Score: 1927
Period size: 106 Copynumber: 13.0 Consensus size: 106
133587 GTTGTGAAGT
133597 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * *
133662 CTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGACTT
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* * *
133703 TGAAATT-GGAAATTATTTATTGACAACCAGCGGTCCCTTTGTCGTAAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * *
133767 CTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGACTT
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* *
133808 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAATTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
133873 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* * * *
133914 TGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * *
133979 CTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGACTT
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
*
134020 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
134085 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
*
134126 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
134191 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* ** ***
134232 TGAAATTGAG-AA--G----TTGACAGTCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTACTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
134290 CTTGAGTCCAATATCCTTCG-T-T---G-TG-AA---G-T-
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
134319 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* *
134384 CTGGAGTCCAATATCCTTCACTGTGAAATTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
*
134425 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* *
134490 CTGGAGTCCAATATCCTTCGTTGTGAAGTTAAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* ** * ***
134531 TGAAATTGAG-AA--G----TTGACAGTCAGCGGTCCCTTCGTCATGAAGTTGAACTTGTACTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
134589 CTTGAGTCCAATATCCTTCG-T-T---G-TG-AA---G-T-
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
134618 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * *
134683 CTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGACTT
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
* *
134724 TGAAATTGGGAAATTGTTTATTGACAACCAGTGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
*
134789 CTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
134830 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
1 TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
* * * * *
134895 CTGGAGTCCAATTTTCTTCGCTGCGAAGTTGAAATAGACTC
66 CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
134936 TGAA
1 TGAA
134940 TGAAATTAGA
Statistics
Matches: 1113, Mismatches: 85, Indels: 78
0.87 0.07 0.06
Matches are distributed among these distances:
87 18 0.02
88 6 0.01
89 2 0.00
90 2 0.00
92 4 0.00
93 3 0.00
94 118 0.11
95 2 0.00
96 2 0.00
97 2 0.00
98 2 0.00
99 115 0.10
100 4 0.00
101 4 0.00
103 2 0.00
104 1 0.00
105 108 0.10
106 718 0.65
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (106 bp):
TGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGT
CTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
Found at i:134384 original size:405 final size:405
Alignment explanation
Indices: 133424--134939 Score: 1977
Period size: 405 Copynumber: 3.7 Consensus size: 405
133414 AAATTGTTTA
* * *
133424 TTGACAACCAGCGGTCCTTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGATTTCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
*** **
133489 TTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGACAGTCAGCGGTCCCTTCGTCGTGAAGT
66 TTGTGAAGTTGAAATTGG---TGAAATTGTTTA-TTGACAACCAGCGGTCCCTTCGTCGTGAAGT
*** * *
133554 TGAACTTGTACTGTCTTGAGTCAAATATCCTTCG-T-TG----TG-AA---G-T-TGAAATTGGG
127 TGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGAAATTGGG
*
133607 AAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCA
192 AAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCA
* * *
133672 ATATCCTTCGCTGTGAAATTGAAATTGACTTTGAAATT-GGAAATTATTTATTGACAACCAGCGG
257 ATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGG
* * *
133736 TCCCTTTGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAA
322 TCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAA
* *
133801 TTGACTTTGAAATTGGGAAATTG
387 TTGGC-TTGAAATTGAG-AA--G
* *
133824 TTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAATTTGCGTTGTCTGGAGTCCAATATCC
1 ----TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCC
*
133889 TTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTT
62 TTCGTTGTGAAGTTGAAATT-G----G----TGA-AA-TTGTTTATTGACAACCAGCGGTCCCTT
* *
133954 CGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGACT
116 CGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCT
*
134019 TTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTG
181 CTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTG
* *
134084 TCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTG
246 TCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTGTTTATTG
134149 ACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
311 ACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTG
134214 TGAAGTTGAAATTGGCTCTGAAATTGAGAAG
376 TGAAGTTGAAATTGGCT-TGAAATTGAGAAG
** *** *
134245 TTGACAGTCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTACTGTCTTGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
134310 TTGTGAAGTTGAAATTGG-GAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
66 TTGTGAAGTTGAAATTGGTGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
*
134374 CTTGCGTTGTCTGGAGTCCAATATCCTTCACTGTGAAATTGAAATTGGCTCTGAAATTGGGAAAT
131 CTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGAAATTGGGAAAT
134439 TGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
196 TGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
* * * * **
134504 CCTTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGAG-AA--G----TTGACAGTCAGCGGTCCC
261 CCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCC
* * *** *
134562 TTCGTCATGAAGTTGAACTTGTACTGTCTTGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
326 TTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
***
134627 ---GAAATTGTTTA-
391 CTTGAAATTGAGAAG
134638 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
1 TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
*
134703 CTGTGAAATTGAAATTGACTTTGAAATTGG-GAAATTGTTTATTGACAACCAGTGGTCCCTTCGT
66 -T-TG----TG-AA--G---TTGAAATTGGTGAAATTGTTTATTGACAACCAGCGGTCCCTTCGT
* * *
134767 CGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
119 CGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTG
*
134832 AAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
184 AAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCT
* * * *
134897 GGAGTCCAATTTTCTTCGCTGCGAAGTTGAAATAGACTCTGAA
249 GGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAA
134940 TGAAATTAGA
Statistics
Matches: 1001, Mismatches: 77, Indels: 67
0.87 0.07 0.06
Matches are distributed among these distances:
393 59 0.06
394 9 0.01
395 2 0.00
398 75 0.07
399 2 0.00
400 2 0.00
402 2 0.00
404 78 0.08
405 407 0.41
406 2 0.00
407 2 0.00
409 1 0.00
410 3 0.00
411 59 0.06
412 5 0.00
413 2 0.00
416 1 0.00
417 75 0.07
418 2 0.00
421 1 0.00
422 1 0.00
423 111 0.11
424 100 0.10
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (405 bp):
TTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
TTGTGAAGTTGAAATTGGTGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAA
CTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGAAATTGGGAAAT
TGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATAT
CCTTCGCTGTGAAGTTGAAATTGACTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCC
TTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGG
CTTGAAATTGAGAAG
Found at i:134483 original size:299 final size:299
Alignment explanation
Indices: 133395--134929 Score: 2178
Period size: 299 Copynumber: 5.1 Consensus size: 299
133385 GTCAATCTGT
* *
133395 TTGTGAAGTTGGAATTGGGAAATTGTTTATTGACAACCAGCGGTCCTTTCGTCGTGAAGTTGAAC
1 TTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
* * * * *
133460 TTGCGTTGTCTGGATTTCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG-AA--
66 TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGAAATTGGGAAATT
** * *** * *
133522 G----TTGACAGTCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTACTGTCTTGAGTCAAATATC
131 GTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
***
133583 CTTCGTTGTGAAGTTGAAATTGG----GAAATTGTTTA-TTGACAACCAGCGGTCCCTTCGTCGT
196 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGACAACCAGCGGTCCCTTCGTCGT
133643 GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
261 GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* *
133682 CTGTGAAATTGAAATTGACTTTGAAATT-GGAAATTATTTATTGACAACCAGCGGTCCCTTTGTC
1 -T-TG----TG-AA--G---TTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTC
* * *
133746 GTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGACTTTGA
54 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGA
*
133811 AATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAATTTGCGTTGTCTG
119 AATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTG
133876 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
184 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-------GTTGACAA
*
133941 CCAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTGGAGTCCAATATCCTTCG
242 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
133999 CTGTGAAATTGAAATTGACTTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTC
1 -T-TG----TG-AA--G---TTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTC
* * *
134064 GTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
54 GTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGA
134129 AATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTG
119 AATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTG
**
134194 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGACAGTCAGCGG
184 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGACAACCAGCGG
*** *
134259 TCCCTTCGTCGTGAAGTTGAACTTGTACTGTCTTGAGTCCAATATCCTTCG
249 TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
134310 TTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
1 TTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
*
134375 TTGCGTTGTCTGGAGTCCAATATCCTTCACTGTGAAATTGAAATTGGCTCTGAAATTGGGAAATT
66 TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGAAATTGGGAAATT
134440 GTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
131 GTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
* ** *
134505 CTTCGTTGTGAAGTTAAAATTGGCTCTGAAATTGAGAAGTTGACAGTCAGCGGTCCCTTCGTCAT
196 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGACAACCAGCGGTCCCTTCGTCGT
*** *
134570 GAAGTTGAACTTGTACTGTCTTGAGTCCAATATCCTTCG
261 GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
134609 TTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
1 TTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
* *
134674 TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGACTTTGAAATTGGGAAATT
66 TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGAAATTGGGAAATT
*
134739 GTTTATTGACAACCAGTGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
131 GTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
*
134804 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCT
196 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG-AA--G----TTGACAACCAGCGGTCCCT
* *
134869 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATTTTCTTCG
254 TCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
* *
134915 CTGCGAAGTTGAAAT
1 TTGTGAAGTTGAAAT
134930 AGACTCTGAA
Statistics
Matches: 1147, Mismatches: 62, Indels: 58
0.91 0.05 0.05
Matches are distributed among these distances:
288 1 0.00
289 2 0.00
293 2 0.00
294 2 0.00
296 1 0.00
298 97 0.08
299 519 0.45
300 2 0.00
301 1 0.00
302 2 0.00
304 2 0.00
305 76 0.07
306 69 0.06
309 10 0.01
310 1 0.00
311 59 0.05
317 92 0.08
318 209 0.18
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (299 bp):
TTGTGAAGTTGAAATTGGGAAATTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAAC
TTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAATTGAAATTGGCTCTGAAATTGGGAAATT
GTTTATTGACAACCAGCGGTCCCTTCGTCGTAAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGACAACCAGCGGTCCCTTCGTCGT
GAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCG
Found at i:140158 original size:14 final size:14
Alignment explanation
Indices: 140139--140187 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
140129 GCAATAATGT
140139 ATATTATAAAAATA
1 ATATTATAAAAATA
*
140153 ATATTAATCAAAAGTA
1 ATATT-AT-AAAAATA
140169 A-ATTATAAAAATA
1 ATATTATAAAAATA
140182 ATATTA
1 ATATTA
140188 ATTAAAAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 7 0.23
14 11 0.37
15 5 0.17
16 7 0.23
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
ATATTATAAAAATA
Found at i:140173 original size:15 final size:15
Alignment explanation
Indices: 140139--140195 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 15
140129 GCAATAATGT
*
140139 ATATT-ATAAAAATA
1 ATATTAATAAAAGTA
140153 ATATTAATCAAAAGTA
1 ATATTAAT-AAAAGTA
*
140169 A-ATT-ATAAAAATA
1 ATATTAATAAAAGTA
140182 ATATTAATTAAAAG
1 ATATTAA-TAAAAG
140196 GGACGAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
13 7 0.20
14 10 0.29
15 6 0.17
16 12 0.34
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (15 bp):
ATATTAATAAAAGTA
Found at i:152551 original size:40 final size:40
Alignment explanation
Indices: 152500--152616 Score: 202
Period size: 40 Copynumber: 3.0 Consensus size: 40
152490 TATTTTAAAA
*
152500 TAATTTATTTTAAAATAATTTATTATAAAATAATTTATTT
1 TAATTTTTTTTAAAATAATTTATTATAAAATAATTTATTT
152540 TAATTTTTTTTAAAATAATTTATTATAAAATAATTTATTT
1 TAATTTTTTTTAAAATAATTTATTATAAAATAATTTATTT
*
152580 TAA--TTTTTTAAAATAATTTATTATAAAATAAATTATT
1 TAATTTTTTTTAAAATAATTTATTATAAAATAATTTATT
152617 ATAAAATATA
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
38 33 0.44
40 42 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (40 bp):
TAATTTTTTTTAAAATAATTTATTATAAAATAATTTATTT
Found at i:152595 original size:23 final size:25
Alignment explanation
Indices: 152555--152657 Score: 81
Period size: 23 Copynumber: 4.1 Consensus size: 25
152545 TTTTTTAAAA
152555 TAATTTATTATAAAATAATTTATTT
1 TAATTTATTATAAAATAATTTATTT
152580 TAATTT-TT-TAAAATAATTTATTAT
1 TAATTTATTATAAAATAATTTATT-T
* **
152604 AAAATAAATTATTATAAAAT-A--TAGAT
1 ----TAATTTATTATAAAATAATTTATTT
* *
152630 TGATTTATTTTAAAATAATTTATTT
1 TAATTTATTATAAAATAATTTATTT
152655 TAA
1 TAA
152658 ATAATTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 20
0.67 0.10 0.23
Matches are distributed among these distances:
22 13 0.22
23 15 0.25
24 3 0.05
25 11 0.19
26 1 0.02
27 2 0.03
28 5 0.08
29 3 0.05
30 6 0.10
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TAATTTATTATAAAATAATTTATTT
Found at i:152661 original size:14 final size:15
Alignment explanation
Indices: 152487--152667 Score: 163
Period size: 15 Copynumber: 12.5 Consensus size: 15
152477 TAATAAGGTT
152487 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
152502 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
152517 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
152532 ATTTATTTT--AAT-
1 ATTTATTTTAAAATA
152544 -TTT-TTTTAAAATA
1 ATTTATTTTAAAATA
*
152557 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
152572 ATTTA-TTT----TA
1 ATTTATTTTAAAATA
152582 A-TT-TTTTAAAATA
1 ATTTATTTTAAAATA
*
152595 ATTTATTATAAAATA
1 ATTTATTTTAAAATA
* *
152610 AATTATTATAAAATATAGA
1 ATTTATT-TTAAA-AT--A
152629 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
152647 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
152661 ATTTATT
1 ATTTATT
152668 AGTATGGATT
Statistics
Matches: 137, Mismatches: 10, Indels: 39
0.74 0.05 0.21
Matches are distributed among these distances:
9 5 0.04
10 7 0.05
11 3 0.02
12 3 0.02
13 6 0.04
14 19 0.14
15 75 0.55
16 3 0.02
17 2 0.01
18 1 0.01
19 1 0.01
20 2 0.01
21 4 0.03
22 6 0.04
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:152685 original size:32 final size:32
Alignment explanation
Indices: 152647--152776 Score: 172
Period size: 32 Copynumber: 4.4 Consensus size: 32
152637 TTTTAAAATA
152647 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
152679 ATTTATTTTAAATAATTTATTAGTATGTATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
152711 ATTTATTTT--A-AA---A-TA-TA--GATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
152733 ATTTATTTTAAATAATTTATTAGTATCGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
152765 ATTTATTTTAAA
1 ATTTATTTTAAA
152777 ATATAGATTG
Statistics
Matches: 86, Mismatches: 2, Indels: 20
0.80 0.02 0.19
Matches are distributed among these distances:
22 13 0.15
24 3 0.03
25 4 0.05
26 1 0.01
28 1 0.01
29 4 0.05
30 3 0.03
32 57 0.66
ACGTcount: A:0.36, C:0.01, G:0.09, T:0.54
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:152739 original size:54 final size:54
Alignment explanation
Indices: 152674--152904 Score: 253
Period size: 54 Copynumber: 4.2 Consensus size: 54
152664 TATTAGTATG
152674 GATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATA
1 GATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATA
152728 GATTGATTTATTTTAAATAATTTATTAGTATCG-ATTGATTTATTTTAAAATATA
1 GATTGATTTATTTTAAATAATTTATTAGTAT-GTATTGATTTATTTTAAAATATA
* *
152782 GATTGATTTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTA
1 GATTGATTTATTTTAAATAATTTA-TTAGTATGTATTGATTTATTTT--A-AA---A-TA-TA
* * *
152838 TGGATTGATTTATTTTAAATAATTTATTTGTATATATTGATTTATTTTAAAATATG
1 --GATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATA
152894 GATTGATTTAT
1 GATTGATTTAT
152905 AATTGTAGTT
Statistics
Matches: 152, Mismatches: 5, Indels: 40
0.77 0.03 0.20
Matches are distributed among these distances:
47 1 0.01
48 20 0.13
49 2 0.01
50 3 0.02
51 2 0.01
52 2 0.01
54 74 0.49
55 3 0.02
56 3 0.02
57 2 0.01
58 11 0.07
60 2 0.01
61 2 0.01
62 3 0.02
63 2 0.01
64 20 0.13
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (54 bp):
GATTGATTTATTTTAAATAATTTATTAGTATGTATTGATTTATTTTAAAATATA
Found at i:152835 original size:166 final size:167
Alignment explanation
Indices: 152647--153097 Score: 620
Period size: 166 Copynumber: 2.7 Consensus size: 167
152637 TTTTAAAATA
*
152647 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTAGTATGTATTGA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGTATTGA
* * *
152712 TTTATTTTAAAATATAGATTGATTTATTTTAAATAATTTA-TTAGTATCGATTGATTTATTTT-A
66 TTTATTTTAAAATATGGATTGATTTA-TTT-AAT--TGTAGTT-GTATAGATTGATTTATTTTAA
* * ***
152775 A-AA-TA-TAG-ATTGATTTA-TTATTGTAGTTGTATGGATTG
126 ATAATTATTAGTATAGATTGATTTATTGTA-AAATATGGATTG
*
152813 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATATATTGA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGTATTGA
152878 TTTATTTTAAAATATGGATTGATTTA--TAATTGTAGTTGTATAGATTGATTTATTTTAAATAAT
66 TTTATTTTAAAATATGGATTGATTTATTTAATTGTAGTTGTATAGATTGATTTATTTTAAATAA-
*
152941 TTATTAGTATAGATTGATTTATTTTAAAATATGGATTG
130 TTATTAGTATAGATTGATTTATTGTAAAATATGGATTG
* *
152979 ATTTATTTTAAATAATTTATTAGTATGAACTGATTTATTTTAAATAATTTATTTGTATAG-ATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTAT-GTATTG
*
153043 ATTTATTTTAAAATATGGATTGATTTA-TT-ATTGTAGTTGTATGGATTGATTTATT
65 ATTTATTTTAAAATATGGATTGATTTATTTAATTGTAGTTGTATAGATTGATTTATT
153098 ATTGTAGTTG
Statistics
Matches: 260, Mismatches: 15, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
160 21 0.08
161 4 0.02
162 5 0.02
163 1 0.00
164 2 0.01
165 3 0.01
166 216 0.83
167 8 0.03
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (167 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATTTATTTGTATGTATTGA
TTTATTTTAAAATATGGATTGATTTATTTAATTGTAGTTGTATAGATTGATTTATTTTAAATAAT
TATTAGTATAGATTGATTTATTGTAAAATATGGATTG
Found at i:152844 original size:32 final size:32
Alignment explanation
Indices: 152803--153170 Score: 160
Period size: 32 Copynumber: 11.0 Consensus size: 32
152793 TATTGTAGTT
152803 GTATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
152835 GTATGGATTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
** *
152867 GTATATATTGATTTATTTTAAAATATGGATTGATT-
1 GTATGGATTGATTTATTTT-AAATA---ATTTATTA
* * * * * *
152902 -TAT-AATTGTAGTT-GTATAGATTGATTTATT-
1 GTATGGATTG-ATTTATTTTA-AATAATTTATTA
* * * * *
152932 -T-T-AAATAATTTATTAGTATAGATTGATTTATTTTAAA
1 GTATGGATTGATTTATT--T-TA-AATAATTTA--TT--A
*
152969 ATATGGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* * *
153001 GTATGAACTGATTTATTTTAAATAATTTATTT
1 GTATGGATTGATTTATTTTAAATAATTTATTA
* *
153033 GTATAGATTGATTTATTTTAAAATATGGATTGATTTA
1 GTATGGATTGATTTATTTT-AAATA---ATTTA-TTA
* * ** * * * *
153070 TTATTGTAGTTGTATGGATTGATT-TATTATTGTAGTT
1 GTA-TGGA-TTG-ATTTATT--TTAAATAATT-TATTA
* *
153107 GTATGAATTGATTTATTTTAAATACTTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
*
153139 GTATAGATTGATTTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATTTATTA
153171 TTGTAGTTGT
Statistics
Matches: 254, Mismatches: 52, Indels: 60
0.69 0.14 0.16
Matches are distributed among these distances:
28 3 0.01
29 5 0.02
30 7 0.03
32 140 0.55
33 22 0.09
34 15 0.06
35 3 0.01
36 20 0.08
37 12 0.05
38 5 0.02
39 4 0.02
40 16 0.06
42 2 0.01
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.53
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATTTATTA
Found at i:152853 original size:112 final size:112
Alignment explanation
Indices: 152724--152968 Score: 427
Period size: 112 Copynumber: 2.2 Consensus size: 112
152714 TATTTTAAAA
*
152724 TATAGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATAGATTGAT
1 TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATAGATTGAT
* *
152789 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
66 TTATAATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAG
* * * *
152836 TATGGATTGATTTATTTTAAATAATTTATTTGTATATATTGATTTATTTTAAAATATGGATTGAT
1 TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATAGATTGAT
152901 TTATAATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAG
66 TTATAATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAG
152948 TATAGATTGATTTATTTTAAA
1 TATAGATTGATTTATTTTAAA
152969 ATATGGATTG
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 125 1.00
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.53
Consensus pattern (112 bp):
TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATAGATTGAT
TTATAATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAG
Found at i:152880 original size:18 final size:16
Alignment explanation
Indices: 152809--153052 Score: 93
Period size: 18 Copynumber: 14.9 Consensus size: 16
152799 AGTTGTATGG
152809 ATTGATTTATTTTA-A
1 ATTGATTTATTTTATA
* * *
152824 A-TAATTTATTAGTATGG
1 ATTGATTTATT-TTAT-A
152841 ATTGATTTATTTTA-A
1 ATTGATTTATTTTATA
*
152856 A-TAATTTATTTGTATA
1 ATTGATTTATTT-TATA
*
152872 TATTGATTTATTTTAAA
1 -ATTGATTTATTTTATA
*
152889 ATATGGATTGA-TTTATA
1 AT-T-GATTTATTTTATA
*
152906 ATTG---TAGTTGTATA
1 ATTGATTTA-TTTTATA
152920 GATTGATTTATTTTA-A
1 -ATTGATTTATTTTATA
* *
152936 A-TAATTTATTAGTATA
1 ATTGATTTATT-TTATA
152952 GATTGATTTATTTTAAAATA
1 -ATTGATTTATTTT---ATA
152972 TGGATTGATTTATTTTA-A
1 ---ATTGATTTATTTTATA
* *
152990 A-TAATTTATTAGTATGA
1 ATTGATTTATT-TTAT-A
*
153007 ACTGATTTATTTTA-A
1 ATTGATTTATTTTATA
*
153022 A-TAATTTATTTGTATA
1 ATTGATTTATTT-TATA
153038 GATTGATTTATTTTA
1 -ATTGATTTATTTTA
153053 AAATATGGAT
Statistics
Matches: 172, Mismatches: 24, Indels: 64
0.66 0.09 0.25
Matches are distributed among these distances:
12 1 0.01
14 47 0.27
15 21 0.12
16 7 0.04
17 28 0.16
18 50 0.29
19 1 0.01
20 3 0.02
22 14 0.08
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (16 bp):
ATTGATTTATTTTATA
Found at i:152943 original size:192 final size:185
Alignment explanation
Indices: 152724--153192 Score: 575
Period size: 192 Copynumber: 2.5 Consensus size: 185
152714 TATTTTAAAA
*
152724 TATAGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAATATAGATTGAT
1 TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATAT-GATTGAT
*
152789 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
65 TTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTT
** *
152854 -AAATAATTTATTTGTATATATTGATT-TATTTTAAAATATGGATTGATTTATAATTGTAGTTG
130 AAAAT-ATGGA-TTG-ATATATT-ATTGTA-GTT---ATATGGATTGATTTATAATTGTAGTTG
152916 TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGGATTGAT
1 TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATAT-GATTGAT
* * * *
152981 TTATTTTAAATAATTTA-TTAGTATGAACTGATTTATTTTAAATAATTTATTTGTATAGATTGAT
65 TTA--TT--AT--TGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGAT
* * *
153045 TTATTTTAAAATATGGATTGATTTATTATTGTAGTTGTATGGATTGATTTATTATTGTAGTTG
123 TTATTTTAAAATATGGATTGATATATTATTGTAGTTATATGGATTGATTTATAATTGTAGTTG
*
153108 TAT-GAATTGATTTATTTTAAATACTTTATTAGTATAGATTGATTTATTTT--AA-AT-A---AT
1 TATAG-ATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGATTGAT
153165 TTATTATTGTAGTTGTATGGATT-ATTTA
65 TTATTATTGTAGTTGTATGGATTGATTTA
153193 AATTTCAGTA
Statistics
Matches: 249, Mismatches: 17, Indels: 37
0.82 0.06 0.12
Matches are distributed among these distances:
177 5 0.02
178 10 0.04
179 2 0.01
180 2 0.01
182 2 0.01
184 5 0.02
187 1 0.00
189 2 0.01
190 2 0.01
191 1 0.00
192 138 0.55
194 2 0.01
195 5 0.02
196 10 0.04
197 5 0.02
198 53 0.21
199 4 0.02
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.53
Consensus pattern (185 bp):
TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAATATGATTGATT
TATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTA
AAATATGGATTGATATATTATTGTAGTTATATGGATTGATTTATAATTGTAGTTG
Found at i:152998 original size:14 final size:14
Alignment explanation
Indices: 152979--153032 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
152969 ATATGGATTG
152979 ATTTATTTTAAATA
1 ATTTATTTTAAATA
* *
152993 ATTTATTAGTATGAACTG
1 ATTTATT--T-T-AAATA
153011 ATTTATTTTAAATA
1 ATTTATTTTAAATA
153025 ATTTATTT
1 ATTTATTT
153033 GTATAGATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 18 0.56
15 1 0.03
16 2 0.06
17 1 0.03
18 10 0.31
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.56
Consensus pattern (14 bp):
ATTTATTTTAAATA
Found at i:153002 original size:54 final size:54
Alignment explanation
Indices: 152804--153022 Score: 210
Period size: 54 Copynumber: 4.0 Consensus size: 54
152794 ATTGTAGTTG
152804 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
** * * * * * * * ***
152857 TAATTTATTTG-TATATATTGATTTATTT-TAAAATATGGATTGATTTATAATTGTAGTTG
1 T-ATGGA-TTGATTTATTTTAAATAATTTAT-TAGTATGGATTGATTTAT--TT-TA-AAA
* *
152916 TATAGATTGATTTATTTTAAATAATTTATTAGTATAGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
* *
152970 TATGGATTGATTTATTTTAAATAATTTATTAGTATGAACTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
153023 TAATTTATTT
Statistics
Matches: 127, Mismatches: 29, Indels: 19
0.73 0.17 0.11
Matches are distributed among these distances:
53 2 0.02
54 80 0.63
55 5 0.04
56 4 0.03
57 4 0.03
58 30 0.24
59 2 0.02
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (54 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:153013 original size:112 final size:112
Alignment explanation
Indices: 152724--153054 Score: 319
Period size: 112 Copynumber: 2.9 Consensus size: 112
152714 TATTTTAAAA
** * ** * * * *
152724 TATAGATTGATTTATTTTAAATAATTTATTAGTATCGATTGATTTATTTTAAAATAT-AGATTGA
1 TATAGATTGATTTATTTTAAATAATGGATTTGTATATATTAAATAATTTTAAAATATGA-ACTGA
* *
152788 TTTATTATTGTAGTTGTATGGATTGATTTATTTTAAATAATTTATTAG
65 TTTATAATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAG
* ** * * * * *
152836 TATGGATTGATTTATTTTAAATAATTTATTTGTATATATTGATTTATTTTAAAATATGGATTGAT
1 TATAGATTGATTTATTTTAAATAATGGATTTGTATATATTAAATAATTTTAAAATATGAACTGAT
152901 TTATAATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAG
66 TTATAATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAG
* * * *
152948 TATAGATTGATTTATTTTAAA-ATATGGA-TTGATTTATTTTAAATAA-TTTATTAGTATGAACT
1 TATAGATTGATTTATTTTAAATA-ATGGATTTG-TATATATTAAATAATTTTA-AAATATGAACT
* *
153010 GATTTATTTTAAATAATTTATTTGTATAGATTGATTTATTTTAAA
63 GATTTA---T-AAT--TGTAGTTGTATAGATTGATTTATTTTAAA
153055 ATATGGATTG
Statistics
Matches: 188, Mismatches: 21, Indels: 14
0.84 0.09 0.06
Matches are distributed among these distances:
111 8 0.04
112 149 0.79
115 1 0.01
116 3 0.02
118 27 0.14
ACGTcount: A:0.35, C:0.01, G:0.12, T:0.53
Consensus pattern (112 bp):
TATAGATTGATTTATTTTAAATAATGGATTTGTATATATTAAATAATTTTAAAATATGAACTGAT
TTATAATTGTAGTTGTATAGATTGATTTATTTTAAATAATTTATTAG
Found at i:153085 original size:26 final size:26
Alignment explanation
Indices: 153056--153123 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
153046 TATTTTAAAA
153056 TATGGATTGATTTATTATTGTAGTTG
1 TATGGATTGATTTATTATTGTAGTTG
153082 TATGGATTGATTTATTATTGTAGTTG
1 TATGGATTGATTTATTATTGTAGTTG
*
153108 TATGAATTGATTTATT
1 TATGGATTGATTTATT
153124 TTAAATACTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (26 bp):
TATGGATTGATTTATTATTGTAGTTG
Found at i:153220 original size:31 final size:31
Alignment explanation
Indices: 153185--153243 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
153175 AGTTGTATGG
* *
153185 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAGTATTGCAAAACTAAA
153216 ATTATTTAAATCTCAGTATTGCAAAACT
1 ATTATTTAAATCTCAGTATTGCAAAACT
153244 CTTTTAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAGTATTGCAAAACTAAA
Found at i:162522 original size:87 final size:87
Alignment explanation
Indices: 162422--162583 Score: 245
Period size: 87 Copynumber: 1.9 Consensus size: 87
162412 GTCATTTTCG
* *
162422 TTTTTATTTAATTAAGATGTGGTCACT-TCGAGTTAACTGTCGTTAATAGCAGTTAAATATTTTG
1 TTTTTATTTAATTAAGATGTAGTCACTCT-GAGTTAACTGTCGTTAACAGCAGTTAAATATTTTG
162486 ACATAACCACACATTTGAGTTCA
65 ACATAACCACACATTTGAGTTCA
* * *
162509 TTTTTATTTAATTAAGATGTAGTCACTCTTAGTTAACTGTTGTTAACATCAGTTAAATATTTTGA
1 TTTTTATTTAATTAAGATGTAGTCACTCTGAGTTAACTGTCGTTAACAGCAGTTAAATATTTTGA
* *
162574 TATAATCACA
66 CATAACCACA
162584 TACTTGGTCA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
87 66 0.99
88 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (87 bp):
TTTTTATTTAATTAAGATGTAGTCACTCTGAGTTAACTGTCGTTAACAGCAGTTAAATATTTTGA
CATAACCACACATTTGAGTTCA
Found at i:162750 original size:25 final size:26
Alignment explanation
Indices: 162668--162751 Score: 79
Period size: 25 Copynumber: 3.3 Consensus size: 26
162658 TTAAATGAAA
*
162668 ATAAAATATTTTAAAATTAA-ATTAAT
1 ATAAAATATTTTTAAATTAATA-TAAT
*
162694 AATAAAATATATTT-AA-TAAGT-TAAT
1 -ATAAAATATTTTTAAATTAA-TATAAT
162719 ATAAAAATATTTTTAAATTAATAT-AT
1 AT-AAAATATTTTTAAATTAATATAAT
162745 ATAAAAT
1 ATAAAAT
162752 TATGTTATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
24 2 0.04
25 22 0.46
26 9 0.19
27 15 0.31
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (26 bp):
ATAAAATATTTTTAAATTAATATAAT
Found at i:162882 original size:2 final size:2
Alignment explanation
Indices: 162875--162929 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
162865 AAAGTATGTA
162875 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
162917 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
162930 ATCCATGCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:163187 original size:2 final size:2
Alignment explanation
Indices: 163175--163208 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
163165 TAAATATAAA
163175 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
163209 ATAATAAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:163494 original size:17 final size:17
Alignment explanation
Indices: 163474--163530 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
163464 TAAGTATGAC
163474 TAAATTAAGATAATATG
1 TAAATTAAGATAATATG
* * *
163491 TAAA-CAACATGACTATG
1 TAAATTAAGAT-AATATG
163508 ACTAAATTAAGATAATATG
1 --TAAATTAAGATAATATG
163527 TAAA
1 TAAA
163531 CAACATGACT
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
16 4 0.13
17 13 0.43
19 9 0.30
20 4 0.13
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.30
Consensus pattern (17 bp):
TAAATTAAGATAATATG
Found at i:163509 original size:36 final size:36
Alignment explanation
Indices: 163468--163541 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
163458 TTATTATAAG
163468 TATGACTAAATTAAGATAATATGTAAACAACATGAC
1 TATGACTAAATTAAGATAATATGTAAACAACATGAC
163504 TATGACTAAATTAAGATAATATGTAAACAACATGAC
1 TATGACTAAATTAAGATAATATGTAAACAACATGAC
163540 TA
1 TA
163542 AATGTGTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.28
Consensus pattern (36 bp):
TATGACTAAATTAAGATAATATGTAAACAACATGAC
Found at i:163526 original size:19 final size:19
Alignment explanation
Indices: 163463--163526 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
163453 TTAATTTATT
163463 ATAAGTATGACTAAATTAAG
1 ATAA-TATGACTAAATTAAG
* *
163483 ATAATATG--TAAA-CAAC
1 ATAATATGACTAAATTAAG
*
163499 ATGACTATGACTAAATTAAG
1 AT-AATATGACTAAATTAAG
163519 ATAATATG
1 ATAATATG
163527 TAAACAACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 9
0.69 0.12 0.18
Matches are distributed among these distances:
16 4 0.12
17 9 0.26
19 13 0.38
20 8 0.24
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (19 bp):
ATAATATGACTAAATTAAG
Found at i:169153 original size:131 final size:131
Alignment explanation
Indices: 168916--169217 Score: 428
Period size: 131 Copynumber: 2.3 Consensus size: 131
168906 ATAGCCTTAG
*
168916 TCATTTATTACTCCAATCGAAATGAAGAGATATCACTATTTCGTCTTAAAATTCAATATCGATTC
1 TCATTTATTACTCCAACCGAAATGAAGAGATATCACTATTTCGTCTTAAAATTCAATATCGATTC
* * * *
168981 GATTGAAAATGATAATATCTAATTATTTTCGATCGAGAATAAATGACCTCTCATACCTTTAAGCA
66 GAATGAAAATGATAATATCTAATTATTTTCAATCGAGAATAAATGACATCTCATACCTTAAAGCA
169046 GA
131 -A
* * *
169048 T-ATTTATTACTTCAACCGAAATGAAGAGATATCATTATTTCGTCTTAAAATTCAATATTGATTC
1 TCATTTATTACTCCAACCGAAATGAAGAGATATCACTATTTCGTCTTAAAATTCAATATCGATTC
* * * * *
169112 GAATGAAAATGATAGTAT-TGAATTATTTTCAATCGATAATAAATGACATCTCCTGCCTTAAATC
66 GAATGAAAATGATAATATCT-AATTATTTTCAATCGAGAATAAATGACATCTCATACCTTAAAGC
169176 AA
130 AA
* * *
169178 TCATTTATTACTCCAACAGAAATGAAAAGATATTACTATT
1 TCATTTATTACTCCAACCGAAATGAAGAGATATCACTATT
169218 CTCAATATCG
Statistics
Matches: 150, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
130 3 0.02
131 146 0.97
132 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (131 bp):
TCATTTATTACTCCAACCGAAATGAAGAGATATCACTATTTCGTCTTAAAATTCAATATCGATTC
GAATGAAAATGATAATATCTAATTATTTTCAATCGAGAATAAATGACATCTCATACCTTAAAGCA
A
Found at i:175945 original size:30 final size:30
Alignment explanation
Indices: 175909--175969 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
175899 TGTTGATTTA
175909 CTTCGGGAATTACTAGTGGTCACCACAGGG
1 CTTCGGGAATTACTAGTGGTCACCACAGGG
175939 CTTCGGGAATTACTAGTGGTCACCACAGGG
1 CTTCGGGAATTACTAGTGGTCACCACAGGG
175969 C
1 C
175970 ATTAGAGAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (30 bp):
CTTCGGGAATTACTAGTGGTCACCACAGGG
Found at i:176678 original size:2 final size:2
Alignment explanation
Indices: 176671--176721 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
176661 TAACAAAAGC
176671 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
176712 AT AT AT AT AT
1 AT AT AT AT AT
176722 CATTATCAAC
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:176957 original size:23 final size:23
Alignment explanation
Indices: 176887--176960 Score: 103
Period size: 23 Copynumber: 3.2 Consensus size: 23
176877 AAGTTCTACA
* *
176887 TAGAAATGTCCCGAAGGACGGCA
1 TAGAAATGTCCCGAAGGACCGCG
*
176910 TAGAAATGTCCCGAAGGATCGCG
1 TAGAAATGTCCCGAAGGACCGCG
* *
176933 TAGAATTGTCCCGAAGGACCACG
1 TAGAAATGTCCCGAAGGACCGCG
176956 TAGAA
1 TAGAA
176961 CCCTCGAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.34, C:0.22, G:0.28, T:0.16
Consensus pattern (23 bp):
TAGAAATGTCCCGAAGGACCGCG
Found at i:177126 original size:21 final size:21
Alignment explanation
Indices: 177067--177126 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 21
177057 GCATGTATTC
* *
177067 ACATAAATCATGGTCAC--AT
1 ACATATATCATAGTCACATAT
* * * *
177086 ACTTATATCTTATTCTCATAT
1 ACATATATCATAGTCACATAT
177107 ACATATATCATAGTCACATA
1 ACATATATCATAGTCACATA
177127 GGATAACATG
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
19 11 0.38
21 18 0.62
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (21 bp):
ACATATATCATAGTCACATAT
Found at i:177228 original size:38 final size:39
Alignment explanation
Indices: 177177--177269 Score: 170
Period size: 38 Copynumber: 2.4 Consensus size: 39
177167 TAACACGTAT
*
177177 ACATATGCTTGTATTCATGTACACATA-GAACCATATAA
1 ACATATGCTTGTATTCATGTACACATATAAACCATATAA
177215 ACATATGCTTGTATTCATGTACACATATAAACCATATAA
1 ACATATGCTTGTATTCATGTACACATATAAACCATATAA
177254 ACATATGCTTGTATTC
1 ACATATGCTTGTATTC
177270 GTGGAATCAT
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 27 0.51
39 26 0.49
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (39 bp):
ACATATGCTTGTATTCATGTACACATATAAACCATATAA
Done.