Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001063.1 Hibiscus syriacus cultivar Beakdansim tig00002103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 151484
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Found at i:622 original size:22 final size:22
Alignment explanation
Indices: 597--638 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
587 ACTATCGCCT
597 CCTTCTATTAACTGGACACACC
1 CCTTCTATTAACTGGACACACC
* *
619 CCTTCTGTTAACTGGCCACA
1 CCTTCTATTAACTGGACACA
639 ACTATTGCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.29
Consensus pattern (22 bp):
CCTTCTATTAACTGGACACACC
Found at i:2703 original size:32 final size:33
Alignment explanation
Indices: 2665--2735 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 33
2655 CAACTCAAGG
* * *
2665 AGTAAAGTACAATTAATTATAAAAAATAAGGGA
1 AGTAAAGTAAAATTAACTATAAAAAATAAGAGA
*
2698 A-TAAAGTAAAATTAACTATAAAAATTAAGAGA
1 AGTAAAGTAAAATTAACTATAAAAAATAAGAGA
2730 AGTAAA
1 AGTAAA
2736 ATCAAACTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 28 0.85
33 5 0.15
ACGTcount: A:0.61, C:0.03, G:0.13, T:0.24
Consensus pattern (33 bp):
AGTAAAGTAAAATTAACTATAAAAAATAAGAGA
Found at i:5941 original size:2 final size:2
Alignment explanation
Indices: 5934--5967 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
5924 TTCTCTAAGC
*
5934 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5968 GTACGTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11736 original size:21 final size:21
Alignment explanation
Indices: 11697--11736 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
11687 AATAAATAAA
* * *
11697 AATAATAATATTTAGTATTCT
1 AATAACAATATTAACTATTCT
11718 AATAACAATATTAACTATT
1 AATAACAATATTAACTATT
11737 TGGACTAACT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (21 bp):
AATAACAATATTAACTATTCT
Found at i:11839 original size:17 final size:18
Alignment explanation
Indices: 11817--11853 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
11807 ATAGTATAGG
11817 GACCAAAAACAAA-AATT
1 GACCAAAAACAAAGAATT
*
11834 GACCAACAACAAAGAATT
1 GACCAAAAACAAAGAATT
11852 GA
1 GA
11854 TCTAAGTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.59, C:0.19, G:0.11, T:0.11
Consensus pattern (18 bp):
GACCAAAAACAAAGAATT
Found at i:20026 original size:22 final size:21
Alignment explanation
Indices: 20001--20043 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
19991 AATAATATCG
20001 AATACATTATCAAATTATCATA
1 AATACATTATCAAATTA-CATA
20023 AATACATTATCAAATTACATA
1 AATACATTATCAAATTACATA
20044 CCTAGCCTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (21 bp):
AATACATTATCAAATTACATA
Found at i:34265 original size:48 final size:48
Alignment explanation
Indices: 34178--34273 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
34168 AAAATAATTC
* * *
34178 ACATCATCAATTAAATAGTAACAAATAACGCTTTTATAATTATTAATA
1 ACATCATCAATTAAATAGTAACAAATAACGATTTCATAATTATAAATA
34226 ACATCATCAATTAAATAGTAACAAATAAC-ATTTGCATAATTATAAATA
1 ACATCATCAATTAAATAGTAACAAATAACGATTT-CATAATTATAAATA
34274 GATATGAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 3 0.07
48 41 0.93
ACGTcount: A:0.50, C:0.12, G:0.04, T:0.33
Consensus pattern (48 bp):
ACATCATCAATTAAATAGTAACAAATAACGATTTCATAATTATAAATA
Found at i:35489 original size:21 final size:21
Alignment explanation
Indices: 35460--35501 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
35450 CTTTACAAAG
*
35460 ACAACAAGTGGTCAATCGTCT
1 ACAAAAAGTGGTCAATCGTCT
35481 ACAAAAAGTGGTCAATCGTCT
1 ACAAAAAGTGGTCAATCGTCT
35502 CACTCTCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (21 bp):
ACAAAAAGTGGTCAATCGTCT
Found at i:36764 original size:33 final size:33
Alignment explanation
Indices: 36727--36790 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
36717 TTTTACACAT
*
36727 TTTTTAAATTGTTAGATTAAATAAATTTAATTA
1 TTTTTAAATTGTGAGATTAAATAAATTTAATTA
36760 TTTTTAAATTGTGAGATTAAATAAATTTAAT
1 TTTTTAAATTGTGAGATTAAATAAATTTAAT
36791 GATTAATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (33 bp):
TTTTTAAATTGTGAGATTAAATAAATTTAATTA
Found at i:36794 original size:17 final size:17
Alignment explanation
Indices: 36741--36796 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
36731 TAAATTGTTA
36741 GATTAAATAAATTTAAT
1 GATTAAATAAATTTAAT
* ** *
36758 TATT-TTTAAATTGTGA-
1 GATTAAATAAATT-TAAT
36774 GATTAAATAAATTTAAT
1 GATTAAATAAATTTAAT
36791 GATTAA
1 GATTAA
36797 TTTAATGATT
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
16 11 0.39
17 17 0.61
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.45
Consensus pattern (17 bp):
GATTAAATAAATTTAAT
Found at i:42354 original size:21 final size:20
Alignment explanation
Indices: 42306--42357 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 20
42296 ATCTGAAAAA
*
42306 ATTGGATATCCAAATTTTCG
1 ATTGGATATCTAAATTTTCG
42326 ---GG-TATCTAAATTTTCGG
1 ATTGGATATCTAAATTTTC-G
42343 ATTGGATATCTAAAT
1 ATTGGATATCTAAAT
42358 ATTCAGATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 9
0.72 0.03 0.25
Matches are distributed among these distances:
16 12 0.46
17 3 0.12
20 2 0.08
21 9 0.35
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (20 bp):
ATTGGATATCTAAATTTTCG
Found at i:46302 original size:21 final size:22
Alignment explanation
Indices: 46276--46322 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
46266 AAATCTTTTC
*
46276 TTTATT-TTACTTTAAAT-TGCT
1 TTTATTATTA-TTTAAATATCCT
46297 TTTATTATTATTTAAATATCCT
1 TTTATTATTATTTAAATATCCT
46319 TTTA
1 TTTA
46323 CCAAAATCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.62
Consensus pattern (22 bp):
TTTATTATTATTTAAATATCCT
Found at i:49091 original size:24 final size:24
Alignment explanation
Indices: 49046--49095 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
49036 TGGTGGTTGG
49046 TTTAATGGATGTTTAAACTTTATT
1 TTTAATGGATGTTTAAACTTTATT
*
49070 TTTAATGGTATGTTT-AAGTTTATT
1 TTTAATGG-ATGTTTAAACTTTATT
49094 TT
1 TT
49096 GGTTCTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.58
Consensus pattern (24 bp):
TTTAATGGATGTTTAAACTTTATT
Found at i:57179 original size:16 final size:16
Alignment explanation
Indices: 57158--57189 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
57148 AATAACAAAC
57158 GTGGTTTTACTGTCAA
1 GTGGTTTTACTGTCAA
57174 GTGGTTTTACTGTCAA
1 GTGGTTTTACTGTCAA
57190 ATAATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.25, T:0.44
Consensus pattern (16 bp):
GTGGTTTTACTGTCAA
Found at i:58146 original size:19 final size:20
Alignment explanation
Indices: 58089--58146 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 20
58079 TAGCTTTCTA
58089 AATTCCTAAAAATAATGTAAAGAT
1 AATTCCTAAAAATAA-G---AGAT
58113 AATTCCTAAAAATAAGAGAT
1 AATTCCTAAAAATAAGAGAT
*
58133 AATT-CTAAAGATAA
1 AATTCCTAAAAATAA
58147 TTCTTGAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 9 0.27
20 8 0.24
23 1 0.03
24 15 0.45
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.28
Consensus pattern (20 bp):
AATTCCTAAAAATAAGAGAT
Found at i:62961 original size:2 final size:2
Alignment explanation
Indices: 62954--62987 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
62944 TCGATATAAC
62954 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62988 TATTTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63551 original size:15 final size:15
Alignment explanation
Indices: 63531--63573 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
63521 ATAAGGTTAT
63531 TTATTTTAAAATAAA
1 TTATTTTAAAATAAA
63546 TTATTTTAAAATAAA
1 TTATTTTAAAATAAA
*
63561 TTATTATAAAATA
1 TTATTTTAAAATA
63574 TGGATTGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATTTTAAAATAAA
Found at i:63601 original size:15 final size:15
Alignment explanation
Indices: 63581--63616 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
63571 ATATGGATTG
63581 ATTTATTTTTAAATA
1 ATTTATTTTTAAATA
63596 ATTTA-TTTTAAATA
1 ATTTATTTTTAAATA
63610 ATTTATT
1 ATTTATT
63617 AGTATGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTATTTTTAAATA
Found at i:63602 original size:52 final size:47
Alignment explanation
Indices: 63529--63642 Score: 147
Period size: 47 Copynumber: 2.3 Consensus size: 47
63519 TAATAAGGTT
63529 ATTTATTTTAAAATAAATTATTTTAAAATAAATTATTATAAAATATGGATTG
1 ATTTATTTTAAAATAAATTATTTT-AAAT-AA-T-TTAT-AAATATGGATTG
* * * *
63581 ATTTATTTTTAAATAATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAAATAAATTATTTTAAATAATTTATAAATATGGATTG
63628 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
63643 TGGATTGATT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
47 24 0.42
48 4 0.07
49 1 0.02
50 2 0.04
51 4 0.07
52 22 0.39
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (47 bp):
ATTTATTTTAAAATAAATTATTTTAAATAATTTATAAATATGGATTG
Found at i:63634 original size:32 final size:32
Alignment explanation
Indices: 63596--63797 Score: 202
Period size: 32 Copynumber: 6.7 Consensus size: 32
63586 TTTTTAAATA
63596 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
** *
63628 ATTTATTTTAAA-ATATGGATT-GATTTGGATTG
1 ATTTATTTTAAATA-ATTTATTAG-TATGGATTG
*
63660 ATTTA--TT--AT--TGTAGTT-GTATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTG
*
63686 ATTTATTTTAAATAATTTATTAGTATTGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
63718 ATTTATTTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTG
*
63750 ATTTA--TT--AT--TGTAGTT-GTATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTG
63776 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
63798 TTGTAATTGT
Statistics
Matches: 141, Mismatches: 10, Indels: 38
0.75 0.05 0.20
Matches are distributed among these distances:
26 34 0.24
27 5 0.04
28 7 0.05
30 8 0.06
31 6 0.04
32 81 0.57
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (32 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTG
Found at i:63706 original size:90 final size:90
Alignment explanation
Indices: 63596--63797 Score: 336
Period size: 90 Copynumber: 2.2 Consensus size: 90
63586 TTTTTAAATA
*
63596 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA-ATATGGATT-GATTTGGATT
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATA-ATGGATTAG-TATGGATT
63659 GATTTATTATTGTAGTTGTATGGATTG
64 GATTTATTATTGTAGTTGTATGGATTG
* **
63686 ATTTATTTTAAATAATTTATTAGTATTGATTGATTTATTTTAAATAATTTATTAGTATGGATTGA
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATGGATTAGTATGGATTGA
63751 TTTATTATTGTAGTTGTATGGATTG
66 TTTATTATTGTAGTTGTATGGATTG
63776 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
63798 TTGTAATTGT
Statistics
Matches: 106, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
90 104 0.98
91 2 0.02
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (90 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATAATGGATTAGTATGGATTGA
TTTATTATTGTAGTTGTATGGATTG
Found at i:63723 original size:18 final size:18
Alignment explanation
Indices: 63700--63757 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
63690 ATTTTAAATA
63700 ATTTATTAGTATTGATTG
1 ATTTATTAGTATTGATTG
* * *
63718 ATTTA-T--T-TTAAATA
1 ATTTATTAGTATTGATTG
*
63732 ATTTATTAGTATGGATTG
1 ATTTATTAGTATTGATTG
63750 ATTTATTA
1 ATTTATTA
63758 TTGTAGTTGT
Statistics
Matches: 29, Mismatches: 7, Indels: 8
0.66 0.16 0.18
Matches are distributed among these distances:
14 9 0.31
15 2 0.07
17 2 0.07
18 16 0.55
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (18 bp):
ATTTATTAGTATTGATTG
Found at i:63775 original size:58 final size:56
Alignment explanation
Indices: 63596--63797 Score: 178
Period size: 58 Copynumber: 3.4 Consensus size: 56
63586 TTTTTAAATA
***
63596 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-T-TTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTTATTGTATGGATTG
* * *
63650 ATTTGGATTGATT-TATTATTGTAGTT-GTATGGATTGATTTATTTTAAATAATTTATTAGTATT
1 ATTT--ATT--TTAAATAATT-TA-TTAGTATGGATTGATTTA---T---T-ATTTATT-GTATG
63713 GATTG
52 GATTG
63718 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTGTAGTTGTATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATT-TA-TTGTATGGATTG
63776 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
63798 TTGTAATTGT
Statistics
Matches: 119, Mismatches: 9, Indels: 36
0.73 0.05 0.22
Matches are distributed among these distances:
54 4 0.03
56 3 0.03
57 8 0.07
58 53 0.45
59 4 0.03
61 1 0.01
63 2 0.02
64 19 0.16
65 6 0.05
66 3 0.03
67 4 0.03
68 12 0.10
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (56 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTTATTGTATGGATTG
Found at i:63816 original size:58 final size:58
Alignment explanation
Indices: 63708--63817 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
63698 TAATTTATTA
* * **
63708 GTATTGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTATTGTAGTT
1 GTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATGGATTATTGTAGTT
63766 GTATGGATTGATTTATTTTAAATAATTTATTA-T-TGTAATTGTATGGATTATT
1 GTATGGATTGATTTATTTTAAATAATTTATTAGTATG-AATTG-ATGGATTATT
63818 TAAATTTCAG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
56 2 0.04
57 5 0.11
58 39 0.85
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (58 bp):
GTATGGATTGATTTATTTTAAATAATTTATTAGTATGAATTGATGGATTATTGTAGTT
Found at i:63869 original size:31 final size:31
Alignment explanation
Indices: 63812--63870 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
63802 AATTGTATGG
* * **
63812 ATTATTTAAATTTCAGTATTGTAAAACTAAA
1 ATTATTTAAATCTCAATATTACAAAACTAAA
63843 ATTATTTAAATCTCAATATTACAAAACT
1 ATTATTTAAATCTCAATATTACAAAACT
63871 CTTTTAAGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.46, C:0.10, G:0.03, T:0.41
Consensus pattern (31 bp):
ATTATTTAAATCTCAATATTACAAAACTAAA
Found at i:67900 original size:21 final size:21
Alignment explanation
Indices: 67783--67900 Score: 80
Period size: 21 Copynumber: 5.7 Consensus size: 21
67773 ACGCGAAATA
**
67783 AAAATCGCAACGCGA-TCCCC
1 AAAATCGCAACGCGATTTTCC
* ** *
67803 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGATTTTCC
*
67823 AAAATCGCAACGCGATTCTT-G
1 AAAATCGCAACGCGATT-TTCC
* ** *
67844 AAAATCGCAATGCGATAGTAC
1 AAAATCGCAACGCGATTTTCC
* **
67865 AAATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTTCC
67886 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
67901 ACACATAAAT
Statistics
Matches: 72, Mismatches: 22, Indels: 7
0.71 0.22 0.07
Matches are distributed among these distances:
19 1 0.01
20 24 0.33
21 45 0.62
22 2 0.03
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (21 bp):
AAAATCGCAACGCGATTTTCC
Found at i:67912 original size:20 final size:20
Alignment explanation
Indices: 67887--68020 Score: 164
Period size: 20 Copynumber: 6.7 Consensus size: 20
67877 CGATTTTCCA
* *
67887 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
67907 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
67927 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
67947 TAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
67967 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
67987 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
68008 AAATCGCAACGCG
1 AAATCGCAACGCG
68021 ATATTTAAAG
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.01
20 79 0.81
21 17 0.17
22 1 0.01
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:67936 original size:40 final size:40
Alignment explanation
Indices: 67887--68021 Score: 182
Period size: 40 Copynumber: 3.4 Consensus size: 40
67877 CGATTTTCCA
67887 AAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
* * * *
67927 AAATCGCAACGTGTATC-CGTTAATCGCAACGCGTATCCGT
1 AAATCGCAACGCG-AACACATAAATCGCAACGCGTATCCGT
** *
67967 AAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAACACAT-AAATCGCAACGCGTATCCGT
68008 AAATCGCAACGCGA
1 AAATCGCAACGCGA
68022 TATTTAAAGC
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 46 0.57
41 33 0.41
ACGTcount: A:0.36, C:0.27, G:0.18, T:0.19
Consensus pattern (40 bp):
AAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
Found at i:68442 original size:33 final size:33
Alignment explanation
Indices: 68403--68473 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
68393 TTCACTTAGA
*
68403 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
68436 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
68469 TTTCA
1 TTTCA
68474 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:68610 original size:41 final size:41
Alignment explanation
Indices: 68552--68629 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
68542 TTGCAGAAGA
*
68552 GTCGCAACGAGATAAATGAAAATCGCAACGAGAGAATGACT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
68593 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
1 GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAAT
68630 CGCAACGCGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.45, C:0.17, G:0.26, T:0.13
Consensus pattern (41 bp):
GTCGCAACGAGAGAAATGAAAATCGCAACGAGAGAATGACT
Found at i:68626 original size:21 final size:21
Alignment explanation
Indices: 68553--68628 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
68543 TGCAGAAGAG
*
68553 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
***
68574 TCGCAACGAGAG-AATGACTG
1 TCGCAACGAGAGAAATGAAAA
68594 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAGAAATGAAAA
68615 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
68629 TCGCAACGCG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.46, C:0.17, G:0.25, T:0.12
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGAAAA
Found at i:70565 original size:93 final size:92
Alignment explanation
Indices: 70406--70595 Score: 353
Period size: 93 Copynumber: 2.1 Consensus size: 92
70396 TAGATTGCTT
70406 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
*
70471 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTATTGGTTG-A
*
70499 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
70564 TTTGTCTTTGTTTTGTCTATTGGTTGA
66 TTTGTCTTTGTTTTGTCTATTGGTTGA
70591 AGTAA
1 AGTAA
70596 TGCAATCCAT
Statistics
Matches: 95, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
92 6 0.06
93 89 0.94
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (92 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTATTGGTTGA
Found at i:70683 original size:19 final size:19
Alignment explanation
Indices: 70643--70770 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
70633 TAGTTTACTT
* *
70643 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
70663 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
70682 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
70701 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
70715 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
70734 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
70748 TCGCAACGCGAAACC-AAA
1 TCGCAACGCGAAACCAAAA
70766 TCGCA
1 TCGCA
70771 TTGCGATTTT
Statistics
Matches: 89, Mismatches: 9, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 9 0.10
19 38 0.43
20 13 0.15
ACGTcount: A:0.45, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:70722 original size:33 final size:32
Alignment explanation
Indices: 70679--70770 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 32
70669 CGCGAAACCA
**
70679 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
70711 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
70744 AAGATCGCAACGCGAAACC-AAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
70771 TTGCGATTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
32 10 0.18
33 46 0.82
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:70793 original size:19 final size:19
Alignment explanation
Indices: 70766--70900 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
70756 CGAAACCAAA
*
70766 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
70785 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
70801 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
70818 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
70834 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
70851 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* *
70870 TCGTGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
70890 TCGTGTTGCGA
1 TCGCGTTGCGA
70901 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 45 0.47
20 13 0.14
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:70807 original size:14 final size:14
Alignment explanation
Indices: 70788--70844 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
70778 TTTCATTTCG
70788 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
70802 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
70819 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
70835 CGTTGCGATT
1 CGTTGCGATT
70845 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:70813 original size:33 final size:33
Alignment explanation
Indices: 70771--70863 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
70761 CCAAATCGCA
*
70771 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
70804 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
70837 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
70864 TTGGTTTCGT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:72856 original size:14 final size:14
Alignment explanation
Indices: 72821--72856 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
72811 GATTGTTTAA
72821 TTGATTTGTAAAAG
1 TTGATTTGTAAAAG
*
72835 ATGA-TTGTAAAAG
1 TTGATTTGTAAAAG
72848 TTGATTTGT
1 TTGATTTGT
72857 GTAATTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TTGATTTGTAAAAG
Found at i:72987 original size:19 final size:19
Alignment explanation
Indices: 72963--73060 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
72953 AAAATTGACT
72963 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
72982 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
73001 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
73015 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
73034 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
73054 ATCGCAA
1 ATCGCAA
73061 CGGGAGAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:73092 original size:53 final size:53
Alignment explanation
Indices: 72963--73079 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
72953 AAAATTGACT
72963 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
*
73015 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGGGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
73068 ATCGCAATGCGA
1 ATCGCAATGCGA
73080 TTTTAATTTC
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 29 0.46
53 34 0.54
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.14
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:73097 original size:19 final size:19
Alignment explanation
Indices: 73069--73276 Score: 257
Period size: 19 Copynumber: 11.7 Consensus size: 19
73059 AACGGGAGAA
* *
73069 TCGCAATGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
*
73088 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
73104 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
73121 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
73140 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
73159 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
73175 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
73192 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
73211 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
73227 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
73244 TCCGCATTGCGATTTTCATT
1 T-CGCATTGCGATTTTCATT
73264 TCGCATTGCGATT
1 TCGCATTGCGATT
73277 CTCTCGTTGC
Statistics
Matches: 165, Mismatches: 8, Indels: 32
0.80 0.04 0.16
Matches are distributed among these distances:
14 18 0.11
16 21 0.13
17 18 0.11
18 2 0.01
19 91 0.55
20 15 0.09
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:73132 original size:52 final size:52
Alignment explanation
Indices: 73069--73290 Score: 270
Period size: 52 Copynumber: 4.2 Consensus size: 52
73059 AACGGGAGAA
* * * *
73069 TCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-
1 TCGCATTGCGATTTTCATTTCGCATTGCGATT-T-TCATTGCGCA-TTGCGATTC
*
73121 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTC
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGCGATTC
* * *
73173 TCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTC
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGCGATTC
* * *
73225 TCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTC
1 TCGCATTGCGATTTTCATTT-CGCATTGCGATTTTCATTGCGCATTGCGATTC
* *
73278 TCTCGTTGCGATT
1 TCGCATTGCGATT
73291 GTAATTTCCG
Statistics
Matches: 159, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
50 9 0.06
51 5 0.03
52 100 0.63
53 45 0.28
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.45
Consensus pattern (52 bp):
TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGCGATTC
Found at i:73150 original size:71 final size:71
Alignment explanation
Indices: 73069--73223 Score: 292
Period size: 71 Copynumber: 2.2 Consensus size: 71
73059 AACGGGAGAA
*
73069 TCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATT
73134 TTCATT
66 TTCATT
*
73140 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATT
73205 TTCATT
66 TTCATT
73211 TCGCATTGCGATT
1 TCGCATTGCGATT
73224 CTCTCGTTGC
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 82 1.00
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.45
Consensus pattern (71 bp):
TCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATT
TTCATT
Found at i:73298 original size:33 final size:33
Alignment explanation
Indices: 73075--73290 Score: 215
Period size: 33 Copynumber: 6.2 Consensus size: 33
73065 AGAATCGCAA
*
73075 TGCGATTTTAATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
*
73108 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCAT
1 TGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG--T
73146 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
*
73179 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCAT
1 TGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG--T
* * *
73217 TGCGATTCTCTCGTTGCG-ATTTTC-ATT-TC-CGCAT
1 TGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG--T
73251 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
73284 TGCGATT
1 TGCGATT
73291 GTAATTTCCG
Statistics
Matches: 155, Mismatches: 11, Indels: 34
0.77 0.05 0.17
Matches are distributed among these distances:
32 9 0.06
33 61 0.39
34 14 0.09
35 13 0.08
36 11 0.07
37 2 0.01
38 33 0.21
39 3 0.02
40 9 0.06
ACGTcount: A:0.14, C:0.23, G:0.18, T:0.46
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCATTGCGATTCTCTCGT
Found at i:73300 original size:53 final size:52
Alignment explanation
Indices: 73126--73290 Score: 321
Period size: 52 Copynumber: 3.2 Consensus size: 52
73116 TCATTTCGCA
73126 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
73178 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
73230 TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTT-CGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
73283 TTGCGATT
1 TTGCGATT
73291 GTAATTTCCG
Statistics
Matches: 112, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
52 67 0.60
53 45 0.40
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:73307 original size:53 final size:53
Alignment explanation
Indices: 73126--73309 Score: 318
Period size: 52 Copynumber: 3.5 Consensus size: 53
73116 TCATTTCGCA
73126 TTGCGATTTTCATTT-CGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
73178 TTGCGATTTTCATTT-CGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
73230 TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
* * **
73283 TTGCGATTGTAATTTCCGTGTTGCGAT
1 TTGCGATTTTCATTTCCGCATTGCGAT
73310 AGTCAAATGC
Statistics
Matches: 127, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
52 67 0.53
53 60 0.47
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (53 bp):
TTGCGATTTTCATTTCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:75805 original size:24 final size:24
Alignment explanation
Indices: 75771--75817 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
75761 CTGAAACATC
75771 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
75795 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
75818 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:75824 original size:24 final size:24
Alignment explanation
Indices: 75784--75838 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
75774 AAAATCCGTG
* * *
75784 TATTGACCAATATCAAAGTCCGGA
1 TATTGACCAAGACCAAAGTCCGAA
* *
75808 TATTGACCAAGACCAAATTTCGAA
1 TATTGACCAAGACCAAAGTCCGAA
75832 TATTGAC
1 TATTGAC
75839 TAGTACTCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (24 bp):
TATTGACCAAGACCAAAGTCCGAA
Found at i:76528 original size:20 final size:20
Alignment explanation
Indices: 76500--76710 Score: 217
Period size: 20 Copynumber: 10.5 Consensus size: 20
76490 AAATTTCAGT
* *
76500 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
76520 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
* *
76540 GTTGCGATTTACAGATTCTT
1 GTTGCGATTTACGGATTCTC
*
76560 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
* *
76580 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
76600 GTTGCGATTTTATGTATTATC
1 GTTGCGA-TTTACGGATTCTC
* *
76621 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
76641 GTTGCGATTAACGGATACAC
1 GTTGCGATTTACGGATTCTC
* *
76661 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* *
76681 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCTC
76701 GTTGCGATTT
1 GTTGCGATTT
76711 TCATATTTGC
Statistics
Matches: 161, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
20 145 0.90
21 16 0.10
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCTC
Found at i:76636 original size:101 final size:101
Alignment explanation
Indices: 76518--76711 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 101
76508 TTACAGATTC
* * * ** *
76518 TCGTTGCGATTTACGGATTA-TCGTTGCGATTTACAGATTCTTGTTGCGATTTACGGATTA-TCG
1 TCGTTGCGATTTACGGA-TACGCGTTGCGATTAACAGATACACGTTGCGATTTACGGA-TACGCG
76581 TTGCGATTTACG-GATACGCGTTGCGATTTTATGTATTA
64 TTGCGATTTACGTG-TACGCGTTGCGATTTTATGTATTA
*
76619 TCGTTGCGATTTACGGATACGCGTTGCGATTAACGGATACACGTTGCGATTTACGGATACGCGTT
1 TCGTTGCGATTTACGGATACGCGTTGCGATTAACAGATACACGTTGCGATTTACGGATACGCGTT
* *
76684 GCGATTTATGTGTTCGCGTTGCGATTTT
66 GCGATTTACGTGTACGCGTTGCGATTTT
76712 CATATTTGCG
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
100 4 0.05
101 76 0.94
102 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (101 bp):
TCGTTGCGATTTACGGATACGCGTTGCGATTAACAGATACACGTTGCGATTTACGGATACGCGTT
GCGATTTACGTGTACGCGTTGCGATTTTATGTATTA
Found at i:76710 original size:40 final size:40
Alignment explanation
Indices: 76500--76691 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
76490 AAATTTCAGT
* * * *
76500 GTTGTGATTTACAGATTCTCGTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATTATC
* * **
76540 GTTGCGATTTACAGATTCTTGTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATTATC
* *
76580 GTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATC
1 GTTGCGATTTACGGATACGCGTTGCGA-TTTACGGATTATC
* *
76621 GTTGCGATTTACGGATACGCGTTGCGATTAACGGA-TACAC
1 GTTGCGATTTACGGATACGCGTTGCGATTTACGGATTA-TC
76661 GTTGCGATTTACGGATACGCGTTGCGATTTA
1 GTTGCGATTTACGGATACGCGTTGCGATTTA
76692 TGTGTTCGCG
Statistics
Matches: 137, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 97 0.71
41 38 0.28
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (40 bp):
GTTGCGATTTACGGATACGCGTTGCGATTTACGGATTATC
Found at i:84994 original size:15 final size:16
Alignment explanation
Indices: 84974--85003 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
84964 AATTTGGGTC
84974 AAATTTAAAA-ATTTA
1 AAATTTAAAATATTTA
84989 AAATTTAAAATATTT
1 AAATTTAAAATATTT
85004 TTTGATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATTTAAAATATTTA
Found at i:91756 original size:31 final size:31
Alignment explanation
Indices: 91721--91853 Score: 101
Period size: 32 Copynumber: 4.2 Consensus size: 31
91711 GACGTTTTCC
* *
91721 TTTCTTATCCTTTGCACCACCATCACTCTCT
1 TTTCTTAGCCTTGGCACCACCATCACTCTCT
**
91752 TTTCTTTAGCCTTGGCACCGTCATCACTCTCT
1 TTTC-TTAGCCTTGGCACCACCATCACTCTCT
* * * *
91784 TTTCTTTAGCCTTGACATTGCCACGA-CGCT-TTT
1 TTTC-TTAGCCTTGGCA---CCACCATCACTCTCT
* *
91817 CTTTCTTAGCCTTTGCACCACCGTCACTCT-T
1 -TTTCTTAGCCTTGGCACCACCATCACTCTCT
91848 TTTCTT
1 TTTCTT
91854 TTTTTTATGT
Statistics
Matches: 80, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
30 10 0.12
31 8 0.10
32 40 0.50
33 12 0.15
34 7 0.09
35 3 0.04
ACGTcount: A:0.14, C:0.34, G:0.10, T:0.43
Consensus pattern (31 bp):
TTTCTTAGCCTTGGCACCACCATCACTCTCT
Found at i:91821 original size:97 final size:97
Alignment explanation
Indices: 91668--91854 Score: 279
Period size: 97 Copynumber: 1.9 Consensus size: 97
91658 CTTGATCTTT
** * * *
91668 GCACCGTCATCACTCTCTTTATCTTTAGCCTTTCCGTTATCACGACGTTTTCCTTTCTTATCCTT
1 GCACCGTCATCACTCTCTTTATCTTTAGCCTTGACATTACCACGACGTTTTCCTTTCTTAGCCTT
91733 TGCACCACCATCACTCTCTTTTCTTTAGCCTTG
66 TGCACCACCATCACTCT-TTTTCTTTAGCCTTG
*
91766 GCACCGTCATCACTCTCTTT-TCTTTAGCCTTGACATTGCCACGACGCTTTT-CTTTCTTAGCCT
1 GCACCGTCATCACTCTCTTTATCTTTAGCCTTGACATTACCACGACG-TTTTCCTTTCTTAGCCT
*
91829 TTGCACCACCGTCACTCTTTTTCTTT
65 TTGCACCACCATCACTCTTTTTCTTT
91855 TTTTTATGTT
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
96 8 0.10
97 49 0.60
98 24 0.30
ACGTcount: A:0.14, C:0.34, G:0.10, T:0.42
Consensus pattern (97 bp):
GCACCGTCATCACTCTCTTTATCTTTAGCCTTGACATTACCACGACGTTTTCCTTTCTTAGCCTT
TGCACCACCATCACTCTTTTTCTTTAGCCTTG
Found at i:92088 original size:6 final size:6
Alignment explanation
Indices: 92077--92103 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
92067 TTTAGTCTTC
92077 CCACTA CCACTA CCACTA CCACTA CCA
1 CCACTA CCACTA CCACTA CCACTA CCA
92104 ACACCATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.52, G:0.00, T:0.15
Consensus pattern (6 bp):
CCACTA
Found at i:92806 original size:59 final size:60
Alignment explanation
Indices: 92669--92807 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 60
92659 TCCTCATCTA
* * * ** * * *
92669 AAATTGGTCCCTAAACTTCTACATGTTTCAATTTCACCCCTAAGCTATGACTGTCATTCT
1 AAATTGGTCCCCAAACTTTTAAACATTTCAATTCCACCCCTAAACTATGACTGTCATCCT
* * **
92729 AAGTTAGTCTTCAAACTTTTAAACATTTCAATTCCACCCC-AAACTATGACCT-TCATCCT
1 AAATTGGTCCCCAAACTTTTAAACATTTCAATTCCACCCCTAAACTATGA-CTGTCATCCT
92788 AAATTGGTCCCCAAACTTTT
1 AAATTGGTCCCCAAACTTTT
92808 TGAATATTCT
Statistics
Matches: 62, Mismatches: 16, Indels: 3
0.77 0.20 0.04
Matches are distributed among these distances:
59 30 0.48
60 32 0.52
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.35
Consensus pattern (60 bp):
AAATTGGTCCCCAAACTTTTAAACATTTCAATTCCACCCCTAAACTATGACTGTCATCCT
Found at i:95165 original size:21 final size:21
Alignment explanation
Indices: 95139--95179 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
95129 AGATTGTATT
*
95139 AATCGGCGATTTGAAGGTCCA
1 AATCGGCGATTTGAAAGTCCA
*
95160 AATCGGCGTTTTGAAAGTCC
1 AATCGGCGATTTGAAAGTCC
95180 CGACAATTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (21 bp):
AATCGGCGATTTGAAAGTCCA
Found at i:100591 original size:511 final size:510
Alignment explanation
Indices: 99572--100592 Score: 2015
Period size: 511 Copynumber: 2.0 Consensus size: 510
99562 ACGGTAGGTG
99572 TGGAACACAGAAGTTTTGTGAATTCTGACTTGACTTGGAAGACAGTTTCGAAGAGGAATAGGATA
1 TGGAACACAGAAGTTTTGTGAATTCTGACTTGACTTGGAAGACAGTTTCGAAGAGGAATAGGATA
99637 GGGACCAGGCGTACCAGGAAATCAGTTGCTGCTATAAGTATGACAATAGGATTGGGACTAGCCAA
66 GGGACCAGGCGTACCAGGAAATCAGTTGCTGCTATAAGTATGACAATAGGATTGGGACTAGCCAA
99702 TAAAAATGCCAGAAAAATGGAGAATGTTACAGTGTCAGAGTTAGAGAAGGTAAGATTACATTAAT
131 TAAAAATGCCAGAAAAATGGAGAATGTTACAGTGTCAGAGTTAGAGAAGGTAAGATTACATTAAT
99767 TTGTACTTATAAGACTACCCTCAAGGGTTTCTCACTTGTTTCATCTAATTCTCCATTTTTTTCTA
196 TTGTACTTATAAGACTACCCTCAAGGGTTTCTCACTTGTTTCATCTAATTCTCCATTTTTTTCTA
99832 TTAGCAGCTTGGTGTGGATATCTTAGGACGGCACTTTTGTGAAAAAATGGAGAATGCTCCAATTA
261 TTAGCAGCTTGGTGTGGATATCTTAGGACGGCACTTTTGTGAAAAAATGGAGAATGCTCCAATTA
*
99897 AGAAAAGGAGGTTTATGTTTAGGTCTCCATCACCACCACACCCAATGACCACTTGTCCCAACCTT
326 AGAAAAGGAGGCTTATGTTTAGGTCTCCATCACCACCACACCCAATGACCACTTGTCCCAACCTT
99962 GAAGCCCCTGGAATGCATGTAGATTTTCAAGCTACTCCAGATCAGAATTGTGGTTCAATCACTAA
391 GAAGCCCCTGGAATGCATGTAGATTTTCAAGCTACTCCAGATCAGAATTGTGGTTCAATCACTAA
100027 GCAGTGGCAACAGCTCATGGAATCTGATTGTTCTGCTAAGTCATATGCTCCTAGT
456 GCAGTGGCAACAGCTCATGGAATCTGATTGTTCTGCTAAGTCATATGCTCCTAGT
100082 TGGAACACAGAAGTTTTGTGAATTCTGACTTGACTTGGAAGACAGTTTCGAAGAGGAATAGGATA
1 TGGAACACAGAAGTTTTGTGAATTCTGACTTGACTTGGAAGACAGTTTCGAAGAGGAATAGGATA
100147 GGGACCAGGCGTACCAGGAAATCAGTTGCTGCTATAAGTATGACAATAGGATTGGGACTAGCCAA
66 GGGACCAGGCGTACCAGGAAATCAGTTGCTGCTATAAGTATGACAATAGGATTGGGACTAGCCAA
100212 TAAAAATGCCAGAAAAATGGAGAATGTTACAGTGTCAGAGTTAGAGAAGGTAAGATTACATTAAT
131 TAAAAATGCCAGAAAAATGGAGAATGTTACAGTGTCAGAGTTAGAGAAGGTAAGATTACATTAAT
100277 TTGTACTTATAAGACTACCCTCAAGGGTTTCTCACTTGTTTCATCTAATTCTCCATTTTTTTTCT
196 TTGTACTTATAAGACTACCCTCAAGGGTTTCTCACTTGTTTCATCTAATTCTCCA-TTTTTTTCT
*
100342 ATTAGCAGCTTGGTGTGGATATCTTAGGACGGCACTTTTGTGAAAAAATGGAGAATGTTCCAATT
260 ATTAGCAGCTTGGTGTGGATATCTTAGGACGGCACTTTTGTGAAAAAATGGAGAATGCTCCAATT
100407 AAGAAAAGGAGGCTTATGTTTAGGTCTCCATCACCACCACACCCAATGACCACTTGTCCCAACCT
325 AAGAAAAGGAGGCTTATGTTTAGGTCTCCATCACCACCACACCCAATGACCACTTGTCCCAACCT
100472 TGAAGCCCCTGGAATGCATGTAGATTTTCAAGCTACTCCAGATCAGAATTGTGGTTCAATCACTA
390 TGAAGCCCCTGGAATGCATGTAGATTTTCAAGCTACTCCAGATCAGAATTGTGGTTCAATCACTA
100537 AGCAGTGGCAACAGCTCATGGAATCTGATTGTTCTGCTAAGTCATATGCTCCTAGT
455 AGCAGTGGCAACAGCTCATGGAATCTGATTGTTCTGCTAAGTCATATGCTCCTAGT
100593 ACCGATGATG
Statistics
Matches: 508, Mismatches: 2, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
510 250 0.49
511 258 0.51
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (510 bp):
TGGAACACAGAAGTTTTGTGAATTCTGACTTGACTTGGAAGACAGTTTCGAAGAGGAATAGGATA
GGGACCAGGCGTACCAGGAAATCAGTTGCTGCTATAAGTATGACAATAGGATTGGGACTAGCCAA
TAAAAATGCCAGAAAAATGGAGAATGTTACAGTGTCAGAGTTAGAGAAGGTAAGATTACATTAAT
TTGTACTTATAAGACTACCCTCAAGGGTTTCTCACTTGTTTCATCTAATTCTCCATTTTTTTCTA
TTAGCAGCTTGGTGTGGATATCTTAGGACGGCACTTTTGTGAAAAAATGGAGAATGCTCCAATTA
AGAAAAGGAGGCTTATGTTTAGGTCTCCATCACCACCACACCCAATGACCACTTGTCCCAACCTT
GAAGCCCCTGGAATGCATGTAGATTTTCAAGCTACTCCAGATCAGAATTGTGGTTCAATCACTAA
GCAGTGGCAACAGCTCATGGAATCTGATTGTTCTGCTAAGTCATATGCTCCTAGT
Found at i:101488 original size:225 final size:225
Alignment explanation
Indices: 101097--101551 Score: 901
Period size: 225 Copynumber: 2.0 Consensus size: 225
101087 ATTACTCTGG
101097 GATTTAAATGTTCCAATGGATGCTTGGCCTTGTGATGGAGGAAATGTCGATTTTCAAAAGGATCC
1 GATTTAAATGTTCCAATGGATGCTTGGCCTTGTGATGGAGGAAATGTCGATTTTCAAAAGGATCC
101162 TGTTGATAATATTTCTGTGAGAAGTGAAGAGTTGCAGACTATGGAATCTCGAGATATAAAAACTG
66 TGTTGATAATATTTCTGTGAGAAGTGAAGAGTTGCAGACTATGGAATCTCGAGATATAAAAACTG
101227 ATAATACAAACACTATAAACGAAGTGGTTTCATCTGATGTGGATGGGGGTAATAGGATGACTTCA
131 ATAATACAAACACTATAAACGAAGTGGTTTCATCTGATGTGGATGGGGGTAATAGGATGACTTCA
101292 GACTTGAGAAGCTTACCCGCTGGGACTGAT
196 GACTTGAGAAGCTTACCCGCTGGGACTGAT
*
101322 GATTTAAATGTTCCAATGGATGCTTGGCCTTGTGATGGAGGAAATGTCGATTTTCAAAAGGATTC
1 GATTTAAATGTTCCAATGGATGCTTGGCCTTGTGATGGAGGAAATGTCGATTTTCAAAAGGATCC
101387 TGTTGATAATATTTCTGTGAGAAGTGAAGAGTTGCAGACTATGGAATCTCGAGATATAAAAACTG
66 TGTTGATAATATTTCTGTGAGAAGTGAAGAGTTGCAGACTATGGAATCTCGAGATATAAAAACTG
101452 ATAATACAAACACTATAAACGAAGTGGTTTCATCTGATGTGGATGGGGGTAATAGGATGACTTCA
131 ATAATACAAACACTATAAACGAAGTGGTTTCATCTGATGTGGATGGGGGTAATAGGATGACTTCA
101517 GACTTGAGAAGCTTACCCGCTGGGACTGAT
196 GACTTGAGAAGCTTACCCGCTGGGACTGAT
101547 GATTT
1 GATTT
101552 GGGTACAGAG
Statistics
Matches: 229, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
225 229 1.00
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (225 bp):
GATTTAAATGTTCCAATGGATGCTTGGCCTTGTGATGGAGGAAATGTCGATTTTCAAAAGGATCC
TGTTGATAATATTTCTGTGAGAAGTGAAGAGTTGCAGACTATGGAATCTCGAGATATAAAAACTG
ATAATACAAACACTATAAACGAAGTGGTTTCATCTGATGTGGATGGGGGTAATAGGATGACTTCA
GACTTGAGAAGCTTACCCGCTGGGACTGAT
Found at i:101854 original size:140 final size:142
Alignment explanation
Indices: 101476--101855 Score: 425
Period size: 140 Copynumber: 2.7 Consensus size: 142
101466 ATAAACGAAG
* * * *
101476 TGGTTTCATCTGATG-TGGATGGGGGTAATAGGATGACTTCAGACTTGAGAAGCTTACCCGCTGG
1 TGGTTTCATCTGATGTTGG-TGGGGGTAATAGGATGACTTCAGACTTGAGAAGCATGCCTGTTGG
* ** * *
101540 GACTGATGATTTGGGTACAGAGAAACATGAATCTGGTTATGGTTCACAAGATATAAAAGATGATA
65 GACTGATGATTTGAGTACAGAGAAACATGAATCTGGTTAACGATCACAAGATATAAAAAATGATA
***
101605 CTACAAACGGAGT
130 CTACAAAAACAGT
* * * * *
101618 T-GTTTCATTTGA-GATTGATGGGGGTGATAAGATGACTTCAGACTTGAGAAGCATGCCTGTTTG
1 TGGTTTCATCTGATG-TTGGTGGGGGTAATAGGATGACTTCAGACTTGAGAAGCATGCCTGTTGG
* * ** * *
101681 GACTGATGATTTGAGTGCAGAGGAACAACAATCTGG-TAACGATCAGAATATATAAAAAATTG-T
65 GACTGATGATTTGAGTACAGAGAAACATGAATCTGGTTAACGATCACAAGATATAAAAAA-TGAT
*
101744 ACTCCAAAAACA-T
129 ACTACAAAAACAGT
* *
101757 TGGTTTCCTCTGATGTTGGTGGGGGTAATAGGATGACTTCAGACTCT-AGAATCATGCCTGTTGG
1 TGGTTTCATCTGATGTTGGTGGGGGTAATAGGATGACTTCAGACT-TGAGAAGCATGCCTGTTGG
101821 GACTGAT-ATTTTGAGTACAGAGAAACATGAATCTG
65 GACTGATGA-TTTGAGTACAGAGAAACATGAATCTG
101856 AAGGATGCTC
Statistics
Matches: 196, Mismatches: 35, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
139 3 0.02
140 107 0.55
141 83 0.42
142 3 0.02
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (142 bp):
TGGTTTCATCTGATGTTGGTGGGGGTAATAGGATGACTTCAGACTTGAGAAGCATGCCTGTTGGG
ACTGATGATTTGAGTACAGAGAAACATGAATCTGGTTAACGATCACAAGATATAAAAAATGATAC
TACAAAAACAGT
Found at i:102051 original size:174 final size:174
Alignment explanation
Indices: 101757--102266 Score: 675
Period size: 174 Copynumber: 2.9 Consensus size: 174
101747 CCAAAAACAT
* * *
101757 TGGTTTCCTCTGATGTTGGTGGGGGTAATAGGATGACTTCAGACTCTAGAATCATGCCTGTTGGG
1 TGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACTTCAGACTCCAGAATCATGCCTGTTGGG
* * *
101822 ACTGAT-ATTTTGAGTACAGAGAAACATGAATCTGAAGGATGCTCTGGCTATGATTCACGCTTGC
66 ACTGATGACTTT-AGTACAGAGAAACAAGAATCTGAAGGATGCTCTGACTATGATTCACGCTTGC
* *
101886 AGACTAAGGAACCTCAAGATATGAAAAATGAAACTGCAAACGAAG
130 AGACTAAGGAACCTCAAGATACGAAAAATGAAACTGCAAACCAAG
* *
101931 TGGTTTCATCAGATGTTGATGGGGGTAATAGGATGACTTCGGACTCCAGAATCATGCCTG-TGGA
1 TGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACTTCAGACTCCAGAATCATGCCTGTTGG-
* * **
101995 GACTGATGACTTTAGTACAGAGAAACAGGAATCTGAAGGATGCTCTGACAATGATTCGTGCTTGC
65 GACTGATGACTTTAGTACAGAGAAACAAGAATCTGAAGGATGCTCTGACTATGATTCACGCTTGC
* * **
102060 AGACTAAGGAACCTCAAGATACAAAAAATCATGCTGCAAACCAAG
130 AGACTAAGGAACCTCAAGATACGAAAAATGAAACTGCAAACCAAG
** * * * ** *
102105 TGGTTTCATCTGATGAAGATGGCGATAATAGTATGACTTCAGACTTGAGAACCACT-CCTGTTGG
1 TGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACTTCAGACTCCAGAATCA-TGCCTGTTGG
* * ** *
102169 GACTGATGACTTTAGTACAGAGAAATAAGAATCTGAAGGATGTTCTGTGTGTGATTCACGCTTGC
65 GACTGATGACTTTAGTACAGAGAAACAAGAATCTGAAGGATGCTCTGACTATGATTCACGCTTGC
* *
102234 AGACCAAGGAACCTGAAGATACGAAAAATGAAA
130 AGACTAAGGAACCTCAAGATACGAAAAATGAAA
102267 GATGCTGTGT
Statistics
Matches: 290, Mismatches: 42, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
173 3 0.01
174 279 0.96
175 8 0.03
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (174 bp):
TGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACTTCAGACTCCAGAATCATGCCTGTTGGG
ACTGATGACTTTAGTACAGAGAAACAAGAATCTGAAGGATGCTCTGACTATGATTCACGCTTGCA
GACTAAGGAACCTCAAGATACGAAAAATGAAACTGCAAACCAAG
Found at i:102601 original size:174 final size:174
Alignment explanation
Indices: 102305--102778 Score: 831
Period size: 174 Copynumber: 2.7 Consensus size: 174
102295 CCAAAGAACC
*
102305 TGAAGAGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTG
1 TGAAGCGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTG
* * * * * *
102370 TTGAGACTGATGACTTTAGTACAAAGGAACAAGAATCTGAAGGATGCTCTGTTTATGATTCACGC
66 TTGGGACTGATGAGTTTAGTACAGAGAAACATGAAACTGAAGGATGCTCTGTTTATGATTCACGC
102435 TTGCAGACCAAGGAACCTGAAGATACGAAAAATGACACTACAAA
131 TTGCAGACCAAGGAACCTGAAGATACGAAAAATGACACTACAAA
102479 TGAAGCGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTG
1 TGAAGCGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTG
102544 TTGGGACTGATGAGTTTAGTACAGAGAAACATGAAACTGAAGGATGCTCTGTTTATGATTCACGC
66 TTGGGACTGATGAGTTTAGTACAGAGAAACATGAAACTGAAGGATGCTCTGTTTATGATTCACGC
*
102609 TTGCAGACCAAGGAACCTGAAGATATGAAAAATGACACTACAAA
131 TTGCAGACCAAGGAACCTGAAGATACGAAAAATGACACTACAAA
**
102653 CCAAGCGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTG
1 TGAAGCGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTG
* * *
102718 TTGGGACCGATGAGTTTAGTACAGAGAAACATGAAACTGAAGGAGGCTCTGATTATGATTC
66 TTGGGACTGATGAGTTTAGTACAGAGAAACATGAAACTGAAGGATGCTCTGTTTATGATTC
102779 TCAATTTGAG
Statistics
Matches: 287, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 287 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (174 bp):
TGAAGCGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTG
TTGGGACTGATGAGTTTAGTACAGAGAAACATGAAACTGAAGGATGCTCTGTTTATGATTCACGC
TTGCAGACCAAGGAACCTGAAGATACGAAAAATGACACTACAAA
Found at i:102631 original size:379 final size:379
Alignment explanation
Indices: 101927--102643 Score: 1074
Period size: 379 Copynumber: 1.9 Consensus size: 379
101917 AACTGCAAAC
* * * *
101927 GAAGTGGTTTCATCAGATGTTGATGGGGGTAATAGGATGACTTCGGACTCCAGAATCATGCCTGT
1 GAAGAGGTTTCATCAGATGTTGATGGGGATAATAGGATGACTTCAGACTCCAGAACCATGCCTGT
* * **
101992 GGAGACTGATGACTTTAGTACAGAGAAACAGGAATCTGAAGGATGCTCTGACAATGATTCGTGCT
66 GGAGACTGATGACTTTAGTACAAAGAAACAAGAATCTGAAGGATGCTCTGACAATGATTCACGCT
* ** * *
102057 TGCAGACTAAGGAACCTCAAGATACAAAAAATCATGCTGCAAACCAAGTGGTTTCATCTGATGAA
131 TGCAGACCAAGGAACCTCAAGATACAAAAAATCACACTACAAACCAAGCGGTTTCATCTGATGAA
*
102122 GATGGCGATAATAGTATGACTTCAGACTTGAGAACCACTCCTGTTGGGACTGATGACTTTAGTAC
196 GATGGCGATAATAGGATGACTTCAGACTTGAGAACCACTCCTGTTGGGACTGATGACTTTAGTAC
* * * *
102187 AGAGAAATAAGAATCTGAAGGATGTTCTGTGTGTGATTCACGCTTGCAGACCAAGGAACCTGAAG
261 AGAGAAACAAGAAACTGAAGGATGCTCTGTGTATGATTCACGCTTGCAGACCAAGGAACCTGAAG
102252 ATACGAAAAATGAAAGATGCTGTGTGTGATTCTCGCTTGCAGACCAAAGAACCT
326 ATACGAAAAATGAAAGATGCTGTGTGTGATTCTCGCTTGCAGACCAAAGAACCT
* ** *
102306 GAAGAGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTGT
1 GAAGAGGTTTCATCAGATGTTGATGGGGATAATAGGATGACTTCAGACTCCAGAACCATGCCTGT
* * ***
102371 TGAGACTGATGACTTTAGTACAAAGGAACAAGAATCTGAAGGATGCTCTGTTTATGATTCACGCT
66 GGAGACTGATGACTTTAGTACAAAGAAACAAGAATCTGAAGGATGCTCTGACAATGATTCACGCT
* * * ** **
102436 TGCAGACCAAGGAACCTGAAGATACGAAAAATGACACTACAAATGAAGCGGTTTCATCTGATGTT
131 TGCAGACCAAGGAACCTCAAGATACAAAAAATCACACTACAAACCAAGCGGTTTCATCTGATGAA
* * *
102501 GATGGGGATAATAGGATGACTTCAGACTTGAGAACCATTCCTGTTGGGACTGATGAGTTTAGTAC
196 GATGGCGATAATAGGATGACTTCAGACTTGAGAACCACTCCTGTTGGGACTGATGACTTTAGTAC
* *
102566 AGAGAAACATGAAACTGAAGGATGCTCTGTTTATGATTCACGCTTGCAGACCAAGGAACCTGAAG
261 AGAGAAACAAGAAACTGAAGGATGCTCTGTGTATGATTCACGCTTGCAGACCAAGGAACCTGAAG
*
102631 ATATGAAAAATGA
326 ATACGAAAAATGA
102644 CACTACAAAC
Statistics
Matches: 298, Mismatches: 40, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
379 298 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (379 bp):
GAAGAGGTTTCATCAGATGTTGATGGGGATAATAGGATGACTTCAGACTCCAGAACCATGCCTGT
GGAGACTGATGACTTTAGTACAAAGAAACAAGAATCTGAAGGATGCTCTGACAATGATTCACGCT
TGCAGACCAAGGAACCTCAAGATACAAAAAATCACACTACAAACCAAGCGGTTTCATCTGATGAA
GATGGCGATAATAGGATGACTTCAGACTTGAGAACCACTCCTGTTGGGACTGATGACTTTAGTAC
AGAGAAACAAGAAACTGAAGGATGCTCTGTGTATGATTCACGCTTGCAGACCAAGGAACCTGAAG
ATACGAAAAATGAAAGATGCTGTGTGTGATTCTCGCTTGCAGACCAAAGAACCT
Found at i:108735 original size:227 final size:227
Alignment explanation
Indices: 108340--108791 Score: 841
Period size: 227 Copynumber: 2.0 Consensus size: 227
108330 AGAAAACAAT
*
108340 GATAATTCTCTCTTGATAAAAAGAAGAAAACAACTCTCAATAAACTCTCTAAATTCTCTAGTATT
1 GATAATTCTCTCTTAATAAAAAGAAGAAAACAACTCTCAATAAACTCTCTAAATTCTCTAGTATT
* *
108405 GGAAGAAAGCTAGAATGCTTTGGGATGGTTTTGTAGCTAAATGAGCTAGGGTATTTATAGTTGAA
66 GGAAGAAAACTAGAATGCTTTGGGATGATTTTGTAGCTAAATGAGCTAGGGTATTTATAGTTGAA
*
108470 GCTTAAAGACTAATTTGTAAATACCCTAAATTACAATGACTAAAATTGAGATTTTACCATTGTTG
131 GCTTAAAGACTAATTTGTAAAAACCCTAAATTACAATGACTAAAATTGAGATTTTACCATTGTTG
*
108535 AAAAATCAACAATTGTTGTTATATTTTCGGTG
196 AAAAATCAACAATTGATGTTATATTTTCGGTG
*
108567 GATAATTCTCTCTTAATAAAAAGGAGAAAACAACTCTCAATAAACTCTCTAAATTCTCTAGTATT
1 GATAATTCTCTCTTAATAAAAAGAAGAAAACAACTCTCAATAAACTCTCTAAATTCTCTAGTATT
*
108632 GGAAGAAAACTATAATGCTTTGGGATGATTTTGTAGCTAAATGAGCTAGGGTATTTATAGTTGAA
66 GGAAGAAAACTAGAATGCTTTGGGATGATTTTGTAGCTAAATGAGCTAGGGTATTTATAGTTGAA
108697 GCTTAAAGACTAATTTGTAAAAACCCTAAATTACAATGACTAAAATTGAGATTTTACCATTGTTG
131 GCTTAAAGACTAATTTGTAAAAACCCTAAATTACAATGACTAAAATTGAGATTTTACCATTGTTG
108762 AAAAATCAACAATTGATGTTATATTTTCGG
196 AAAAATCAACAATTGATGTTATATTTTCGG
108792 CGCCACCGAA
Statistics
Matches: 218, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
227 218 1.00
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (227 bp):
GATAATTCTCTCTTAATAAAAAGAAGAAAACAACTCTCAATAAACTCTCTAAATTCTCTAGTATT
GGAAGAAAACTAGAATGCTTTGGGATGATTTTGTAGCTAAATGAGCTAGGGTATTTATAGTTGAA
GCTTAAAGACTAATTTGTAAAAACCCTAAATTACAATGACTAAAATTGAGATTTTACCATTGTTG
AAAAATCAACAATTGATGTTATATTTTCGGTG
Found at i:114119 original size:32 final size:33
Alignment explanation
Indices: 114080--114150 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
114070 TCAAAACTTT
* *
114080 AAAAATTTAAAG-GTTTAAATTAAATTTTTTTA
1 AAAAATTTAAAGAGTTCAAATTAAATTTTTTAA
** *
114112 AAAAATTTAAAGAGTTCAGTTTACATTTTTTAA
1 AAAAATTTAAAGAGTTCAAATTAAATTTTTTAA
114145 AAAAAT
1 AAAAAT
114151 GGGGTCTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
32 12 0.36
33 21 0.64
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (33 bp):
AAAAATTTAAAGAGTTCAAATTAAATTTTTTAA
Found at i:118045 original size:35 final size:35
Alignment explanation
Indices: 117980--118047 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
117970 TTGGAAACTT
**
117980 AGATGTCAGATTTCGGTTTCTCTCTGTTTTAGTTG
1 AGATGTCAGATTTCGGTTTCTCTCCATTTTAGTTG
* *
118015 AGATGTCGGATATT-GGTTTCTTTCCATTTTAGT
1 AGATGTCAGAT-TTCGGTTTCTCTCCATTTTAGT
118048 CTTTCTTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 26 0.93
36 2 0.07
ACGTcount: A:0.16, C:0.13, G:0.22, T:0.49
Consensus pattern (35 bp):
AGATGTCAGATTTCGGTTTCTCTCCATTTTAGTTG
Found at i:122984 original size:28 final size:28
Alignment explanation
Indices: 122940--122994 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
122930 ATAAAAATAT
122940 TTTATTATATTATATAT-TTATTTATTTA
1 TTTATTATATTATATATATT-TTTATTTA
122968 TTTATTATTATTA-ATATATTTTTATTT
1 TTTATTA-TATTATATATATTTTTATTT
122995 TATTATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (28 bp):
TTTATTATATTATATATATTTTTATTTA
Found at i:122992 original size:32 final size:31
Alignment explanation
Indices: 122941--123002 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
122931 TAAAAATATT
*
122941 TTATTATATTATATATTTA-TTTATTTATTTA
1 TTATTATAATATATATTTATTTTA-TTATTTA
*
122972 TTATTATTAATATATTTTTATTTTATTATTT
1 TTATTA-TAATATATATTTATTTTATTATTT
123003 TTACAGGCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 6 0.22
32 17 0.63
33 4 0.15
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (31 bp):
TTATTATAATATATATTTATTTTATTATTTA
Found at i:123000 original size:28 final size:26
Alignment explanation
Indices: 122937--123001 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 26
122927 TCTATAAAAA
122937 TATTTTATTA-TATTATATATTTATT
1 TATTTTATTATTATTATATATTTATT
122962 TA-TTTATTTATTATTATTAATATATT-TT
1 TATTTTA-TTATTATTA-T-ATAT-TTATT
122990 TATTTTATTATT
1 TATTTTATTATT
123002 TTTACAGGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
24 4 0.12
25 5 0.15
26 5 0.15
27 1 0.03
28 13 0.38
29 6 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TATTTTATTATTATTATATATTTATT
Found at i:123427 original size:12 final size:11
Alignment explanation
Indices: 123410--123456 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 11
123400 TGACTTATTC
123410 TTTTTATTTCTT
1 TTTTTATTT-TT
123422 TTTTTATTTATT
1 TTTTTATTT-TT
123434 TATTTTATATTTT
1 T-TTTTAT-TTTT
123447 TTTTTATTTT
1 TTTTTATTTT
123457 CTCCTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
11 3 0.09
12 18 0.56
13 9 0.28
14 2 0.06
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTATTTTT
Found at i:123432 original size:25 final size:25
Alignment explanation
Indices: 123411--123527 Score: 78
Period size: 28 Copynumber: 4.4 Consensus size: 25
123401 GACTTATTCT
123411 TTTTAT-TTCTTTTTTTATTTATTTA
1 TTTTATATT-TTTTTTTATTTATTTA
123436 TTTTATATTTTTTTTTATTT-TCTCCTAA
1 TTTTATATTTTTTTTTATTTAT-T--T-A
* *
123464 TTTTAATATTTTTTTTTACATTGTTATA
1 TTTT-ATATTTTTTTTTA-TTTATT-TA
*
123492 TATATATATTTTTTTTTCATTT-TTTCA
1 T-TTTATATTTTTTTTT-ATTTATTT-A
*
123519 TTTTTTATT
1 TTTTATATT
123528 AATATTATTA
Statistics
Matches: 75, Mismatches: 6, Indels: 21
0.74 0.06 0.21
Matches are distributed among these distances:
24 1 0.01
25 18 0.24
26 9 0.12
27 5 0.07
28 21 0.28
29 17 0.23
30 3 0.04
31 1 0.01
ACGTcount: A:0.20, C:0.06, G:0.01, T:0.74
Consensus pattern (25 bp):
TTTTATATTTTTTTTTATTTATTTA
Found at i:136601 original size:141 final size:140
Alignment explanation
Indices: 136336--136743 Score: 487
Period size: 141 Copynumber: 2.9 Consensus size: 140
136326 GAATCTCAAG
** * *
136336 ATATAAAATCTGATACTACAAACGAAGTGGTTTCATCTGATGTGGATGGGGGTAATAGGATGACT
1 ATATAAAAAATGATACTACAAA-GGAGTGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACT
* * *
136401 TCAGAATTGAGAAGCATGCCTGCTGGGACTGATGATTTGGGTACAGAGAAACAGGAATCTGGTTA
65 TCAGACTTGAGAAGCATGCCTGTTGGGACTGATGATTTGAGTACAGAGAAACAGGAATCTGGTTA
*
136466 TGGTTCACAAT
130 TGATTCACAAT
* * * * *
136477 ATATAAAAGATGATACTACAAATGGAGTTGTTTCATCTGATATTGATGGGGGTGATAAGATGACT
1 ATATAAAAAATGATACTACAAA-GGAGTGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACT
* ** * *
136542 TCAGACTTGAGAAGCATGCCTGTTTGGACTGATGATTTGAGTGTAGAGGAA-TGGCAATCTGGTT
65 TCAGACTTGAGAAGCATGCCTGTTGGGACTGATGATTTGAGTACAGAGAAACAGG-AATCTGGTT
* *
136606 TTGATTCAGAAT
129 ATGATTCACAAT
* * * * * *
136618 ATTTAAAAAATTATACTACAAAAGAGGTGGTTTCCTCTGATGTTGGTGGGGATAATAGGATGACT
1 ATATAAAAAATGATACTACAAAGGA-GTGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACT
* * * *
136683 TCAGACTCT-AGAATCATGCCTGTTGGGTCTGATAATTTGAGTACAGATAAACAGGAATCTG
65 TCAGACT-TGAGAAGCATGCCTGTTGGGACTGATGATTTGAGTACAGAGAAACAGGAATCTG
136744 AAGGATGCTC
Statistics
Matches: 223, Mismatches: 40, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
140 4 0.02
141 216 0.97
142 3 0.01
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (140 bp):
ATATAAAAAATGATACTACAAAGGAGTGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACTT
CAGACTTGAGAAGCATGCCTGTTGGGACTGATGATTTGAGTACAGAGAAACAGGAATCTGGTTAT
GATTCACAAT
Found at i:136937 original size:174 final size:174
Alignment explanation
Indices: 136623--137113 Score: 714
Period size: 174 Copynumber: 2.8 Consensus size: 174
136613 AGAATATTTA
* * * * * *
136623 AAAAATTATACTACAAAAGAGGTGGTTTCCTCTGATGTTGGTGGGGATAATAGGATGACTTCAGA
1 AAAAATGAAACTACAAACGAAGTGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGA
* * * * *
136688 CTCTAGAATCATGCCTGTTGGGTCTGAT-AATTTGAGTACAGATAAACAGGAATCTGAAGGATGC
66 CTCCAGAACCATGCCTGTTGGGACTGATGACTTT-AGTACAGAGAAACAGGAATCTGAAGGATGC
* * *
136752 TCTGGCTATGATTCACGTTTGCAGACTAAGGAACCTCAAGATATG
130 TCTGACTATGATTCACGCTTGCAGACTAAGGAACCTCAAGATACG
* * *
136797 AAAAATGAAACTGCTAACGAAGTGGTTTCATCTGATGTTGATGGGGGTAATAGGATGACTTCAGA
1 AAAAATGAAACTACAAACGAAGTGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGA
136862 CTCCAGAACCATGCCTGTTGGGACTGATGACTTTAGTACAGAGAAACAGGAATCTGAAGGATGCT
66 CTCCAGAACCATGCCTGTTGGGACTGATGACTTTAGTACAGAGAAACAGGAATCTGAAGGATGCT
*
136927 CTGACTATGATTCACGCTTGCAGACTAAGGAACCTCAGGATACG
131 CTGACTATGATTCACGCTTGCAGACTAAGGAACCTCAAGATACG
* * * *
136971 AAAAATGACATTACAAATGAAGTGGTTTCATCTGATGTTGATGGCGATAATAGGATGACTTCAGA
1 AAAAATGAAACTACAAACGAAGTGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGA
** * *
137036 CTTGAGAACCATTCCTGTTGGGACTGATGACTTTAGTACAGAGAAACATGAATCTGAAGGATGCT
66 CTCCAGAACCATGCCTGTTGGGACTGATGACTTTAGTACAGAGAAACAGGAATCTGAAGGATGCT
**
137101 CTGTTTATGATTC
131 CTGACTATGATTC
137114 TCAATTTGAG
Statistics
Matches: 285, Mismatches: 31, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
174 281 0.99
175 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (174 bp):
AAAAATGAAACTACAAACGAAGTGGTTTCATCTGATGTTGATGGGGATAATAGGATGACTTCAGA
CTCCAGAACCATGCCTGTTGGGACTGATGACTTTAGTACAGAGAAACAGGAATCTGAAGGATGCT
CTGACTATGATTCACGCTTGCAGACTAAGGAACCTCAAGATACG
Found at i:146829 original size:175 final size:173
Alignment explanation
Indices: 146294--147494 Score: 686
Period size: 173 Copynumber: 7.0 Consensus size: 173
146284 AAGCGAAGAG
* * *** * * *
146294 TTGCAGACTACA-AAACCTCAAGATATAAAAAATGACACTTTGAACGAAGTGGTTTCATCCT-AT
1 TTGCAGACTA-AGGAACCTCAAGATAT-AAAAATGATACTACAAACAAAGTAGTTTCAT-ATGAT
** * ** **
146357 GTCGATGGGGGTAATAAGATGACTTCAGACTTGAGAACCATGCCTGTT-GAGACTGATGACTTGA
63 GTTAATGGGGGTAATAGGATGACTTCAGACGAGAGAACCATGCCTGTTGGA-ACTGATGACTCAA
** * * *
146421 GTGTAGAGAAACAGGAATCTGAAGGATGCTTTCGTTATGATTCACAC
127 GTACAGAGAAACAGGAATGTGAAGGATGCTCTGGTTATGATTCACAC
* * * * * * * * *
146468 TTGCAGATTAAGGAATCT-TAGATATAAAAGATGATACTATAGA-TAAGTGGTTCCATCTGATG-
1 TTGCAGACTAAGGAACCTCAAGATATAAAA-ATGATACTACAAACAAAGTAGTTTCATATGATGT
* * * * * ** * * * * * **
146530 T--T-GAGATAATATGACGGCTTCAGACTTGCGAACCTTGCCTGTTGGGACCGATGATTTGAGTG
65 TAATGGGGGTAATAGGATGACTTCAGACGAGAGAACCATGCCTGTTGGAACTGATGACTCAAGT-
* * * * *
146592 A-ACAGAAGCATGAGTGTGAAGGATGCTCTGGTTATGATTCCCAC
129 ACAGAGAAACAGGAATGTGAAGGATGCTCTGGTTATGATTCACAC
* * *
146636 TTGCAGACTAAGGAACCTCAAGATA-AAAAATGTTGCTACAAA-ATGAAGT-GATTTCTTATGAT
1 TTGCAGACTAAGGAACCTCAAGATATAAAAATGATACTACAAACA--AAGTAG-TTTCATATGAT
** * * ** * *
146698 GTTGGTGGGGTTAATATGATGACTTCAGACTTGAGAACCATGCCTGTTGGTTGTAGTGATGACTC
63 GTTAATGGGGGTAATAGGATGACTTCAGACGAGAGAACCATGCCTGTT-G--GAACTGATGACTC
* *
146763 AAGTACAGAGAAACAGGAATGTGAAGGATGC-CTGATTATGATTTACAC
125 AAGTACAGAGAAACAGGAATGTGAAGGATGCTCTGGTTATGATTCACAC
* * *
146811 TTGCAGACTGAGGAACCTCAAGATATAAAGATGATACTACAAACAAAGTAGTTTCATCTGATGTT
1 TTGCAGACTAAGGAACCTCAAGATATAAAAATGATACTACAAACAAAGTAGTTTCATATGATGTT
**
146876 AATGGGGGTAATAGGATGACTTCAGACGAGAGAACCATGCCTGTTGGAACTGATGACTTGAGTAC
66 AATGGGGGTAATAGGATGACTTCAGACGAGAGAACCATGCCTGTTGGAACTGATGACTCAAGTAC
* * * * *
146941 AGAGAAACTGGAATCTGAAGCATGCTCTGGTTATGATGCACAT
131 AGAGAAACAGGAATGTGAAGGATGCTCTGGTTATGATTCACAC
* * ** * * * *
146984 TTGCAGAC-AAGTGAACCTCAAGATACGATACTTGATGCTATGAAA-GAAG-AGGTTTCATCTGA
1 TTGCAGACTAAG-GAACCTCAAGATA-TAAAAATGATACTA-CAAACAAAGTA-GTTTCATATGA
* * * *** * * * **
147046 TGTTGATGAGGGTAATAGGTTGACTTCAGAC-ATGAGAATGGTGACTGTTGGGA-TGATGATTTG
62 TGTTAATGGGGGTAATAGGATGACTTCAGACGA-GAGAACCATGCCTGTTGGAACTGATGACTCA
* ** * *
147109 GGTATC-GAGAAACAGGAATCCGAAGAGAATGCTCTGGCTATGACTCACAC
126 AGTA-CAGAGAAACAGGAATGTGAAG-G-ATGCTCTGGTTATGATTCACAC
* * * * * * * * ** *
147159 TTGCTGACTAATGAACCTCAACATACAAAACATGATGCTATGAAA-GAAGT-GGTTCACCTTATG
1 TTGCAGACTAAGGAACCTCAAGATATAAAA-ATGATACTA-CAAACAAAGTAGTTTCATATGATG
* * * * * * * **
147222 TTGA-GGGGGTAATAGGTTGACTTCAGACTCA-AGAACCATGCTTGTTGGGATTGATGATTTGAG
64 TTAATGGGGGTAATAGGATGACTTCAGAC-GAGAGAACCATGCCTGTTGGAACTGATGACTCAAG
* * * *
147285 TACAGAGAAACAGGGATCTGAAGG--G---T-GTTATGACTCACAT
128 TACAGAGAAACAGGAATGTGAAGGATGCTCTGGTTATGATTCACAC
* * * * **** * *
147325 TTGCAGACTAAGGAATCTCAAGTTATAGAACATGACACTACAATTGCAGTGGTTTCATCTGATG-
1 TTGCAGACTAAGGAACCTCAAGATATA-AAAATGATACTACAAACAAAGTAGTTTCATATGATGT
* ** * ** *
147389 T--TGGGGGTAATAGGACGACTTCAGACTTGAGAACCATTCCTGTTGGGCCTGATGACTCGAGTA
65 TAATGGGGGTAATAGGATGACTTCAGACGAGAGAACCATGCCTGTTGGAACTGATGACTCAAGTA
* * * * *
147452 CAGAGAAACCGGGATCTGAAGGATGTTCTGGTTATTATTCACA
130 CAGAGAAACAGGAATGTGAAGGATGCTCTGGTTATGATTCACA
147495 TTTAAGGATG
Statistics
Matches: 823, Mismatches: 157, Indels: 97
0.76 0.15 0.09
Matches are distributed among these distances:
165 73 0.09
166 45 0.05
167 23 0.03
168 103 0.13
169 20 0.02
170 3 0.00
171 13 0.02
172 58 0.07
173 155 0.19
174 128 0.16
175 152 0.18
176 49 0.06
177 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (173 bp):
TTGCAGACTAAGGAACCTCAAGATATAAAAATGATACTACAAACAAAGTAGTTTCATATGATGTT
AATGGGGGTAATAGGATGACTTCAGACGAGAGAACCATGCCTGTTGGAACTGATGACTCAAGTAC
AGAGAAACAGGAATGTGAAGGATGCTCTGGTTATGATTCACAC
Found at i:147005 original size:348 final size:341
Alignment explanation
Indices: 146362--147494 Score: 818
Period size: 348 Copynumber: 3.3 Consensus size: 341
146352 CCTATGTCGA
** **
146362 TGGGGGTAATAAGATGACTTCAGACTTGAGAACCATGCCTGTTGAGACTGATGACTTGAGTGTAG
1 TGGGGGTAATAAGATGACTTCAGACTTGAGAACCATGCCTGTTGAGACTGATGACTCAAGTACAG
* * * *
146427 AGAAACAGGAATCTGAAGGATGCTTTCGTTATGATTCACACTTGCAGATTAAGGAATCTTAGATA
66 AGAAACAGGAATCTGAAGGATGCTCTCGTTATGATTCACACTTGCAGACTAAGGAACCTAAGATA
* * * * * * **
146492 TAAAAGATGATACTATAGATAAGTGGTTCCATCTGATGTTGAGATAATATGACGGCTTCAGACTT
131 TAAAAGATGATACTACAAAAAAGTAGTTCCATCTGATGTTGAGATAATAGGACGACTTCAGACGA
* * * * * * * *
146557 GCGAACCTTGCCTGTTGGGACCGATGATTTGAGTGAACAGAAGCATGAGTGTGAAGGATGCTCTG
196 GAGAACCATGCCTGTTGGAACCGATGACTTGAGTGAACAGAAACATGAATCTGAAGCATGCTCTG
* *
146622 GTTATGATTCCCACTTGCAGACTAAGGAACCTCAAGATAAAAAATGTTGCTACAAAATGAAGTGA
261 GTTATGATGCACACTTGCAGACTAAGGAACCTCAAGATAAAAAATGTTGCTACAAAATGAAGTGA
146687 TTTCTTATGATGTTGG
326 TTTCTTATGATGTTGG
* * * *
146703 TGGGGTTAATATGATGACTTCAGACTTGAGAACCATGCCTGTTGGTTGTAGTGATGACTCAAGTA
1 TGGGGGTAATAAGATGACTTCAGACTTGAGAACCATGCCTGTT-G-AG-ACTGATGACTCAAGTA
* * *
146768 CAGAGAAACAGGAATGTGAAGGATGC-CT-GATTATGATTTACACTTGCAGACTGAGGAACCTCA
63 CAGAGAAACAGGAATCTGAAGGATGCTCTCG-TTATGATTCACACTTGCAGACTAAGGAACCT-A
* * * *
146831 AGATAT-AAAGATGATACTACAAACAAAGTAGTTTCATCTGATGTTAATGGGGGTAATAGGATGA
126 AGATATAAAAGATGATACTACAAA-AAAGTAGTTCCATCTGATG-T--T-GAGATAATAGGACGA
* *
146895 CTTCAGACGAGAGAACCATGCCTGTTGGAACTGATGACTTGAGT-ACAGAGAAAC-TGGAATCTG
186 CTTCAGACGAGAGAACCATGCCTGTTGGAACCGATGACTTGAGTGA-ACAGAAACAT-GAATCTG
* * ** *
146958 AAGCATGCTCTGGTTATGATGCACATTTGCAGAC-AAGTGAACCTCAAGATACGATACTTGATGC
249 AAGCATGCTCTGGTTATGATGCACACTTGCAGACTAAG-GAACCTCAAGATA--AAAAATGTTGC
** * * * * *
147022 TATGAAA-GAAGAGGTTTCATCTGATGTTGA
311 TACAAAATGAAGTGATTTCTTATGATGTTGG
* * * * *** * * * ***
147052 TGAGGGTAATAGGTTGACTTCAGACATGAGAATGGTGACTGTTGGGA-TGATGATTTGGGTATC-
1 TGGGGGTAATAAGATGACTTCAGACTTGAGAACCATGCCTGTTGAGACTGATGACTCAAGTA-CA
* * * * * *
147115 GAGAAACAGGAATCCGAAGAGAATGCTCTGGCTATGACTCACACTTGCTGACTAATGAACCTCAA
65 GAGAAACAGGAATCTGAAG-G-ATGCTCTCGTTATGATTCACACTTGCAGACTAAGGAACCT-AA
* * * * * * * * * * **
147180 CATACAAAACATGATGCTATGAAAGAAGTGGTT-CACCTTATGTTGAGGGGGTAATAGGTTGACT
127 GATATAAAAGATGATACTA-CAAAAAAGTAGTTCCATCTGATGTTGA---GATAATAGGACGACT
* * * ** * * * *
147244 TCAGACTCA-AGAACCATGCTTGTTGGGATTGATGATTTGAGT-ACAGAGAAACAGGGATCTGAA
188 TCAGAC-GAGAGAACCATGCCTGTTGGAACCGATGACTTGAGTGA-ACAGAAACATGAATCTGAA
* * * * * ***
147307 G---G--GT-GTTATGACT-CACATTTGCAGACTAAGGAATCTCAAGTTATAGAACATGACACTA
251 GCATGCTCTGGTTATGA-TGCACACTTGCAGACTAAGGAACCTCAAG--ATAAAAAATGTTGCTA
* * * * *
147365 C-AATTGCAGTGGTTTCATCTGATG-T--
313 CAAAATGAAGTGATTTCTTATGATGTTGG
* * * * * *
147390 TGGGGGTAATAGGACGACTTCAGACTTGAGAACCATTCCTGTTGGGCCTGATGACTCGAGTACAG
1 TGGGGGTAATAAGATGACTTCAGACTTGAGAACCATGCCTGTTGAGACTGATGACTCAAGTACAG
* * * * *
147455 AGAAACCGGGATCTGAAGGATGTTCTGGTTATTATTCACA
66 AGAAACAGGAATCTGAAGGATGCTCTCGTTATGATTCACA
147495 TTTAAGGATG
Statistics
Matches: 636, Mismatches: 122, Indels: 72
0.77 0.15 0.09
Matches are distributed among these distances:
337 17 0.03
338 39 0.06
339 27 0.04
340 3 0.00
341 95 0.15
342 7 0.01
343 47 0.07
344 60 0.09
345 29 0.05
346 3 0.00
347 80 0.13
348 143 0.22
349 71 0.11
350 15 0.02
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (341 bp):
TGGGGGTAATAAGATGACTTCAGACTTGAGAACCATGCCTGTTGAGACTGATGACTCAAGTACAG
AGAAACAGGAATCTGAAGGATGCTCTCGTTATGATTCACACTTGCAGACTAAGGAACCTAAGATA
TAAAAGATGATACTACAAAAAAGTAGTTCCATCTGATGTTGAGATAATAGGACGACTTCAGACGA
GAGAACCATGCCTGTTGGAACCGATGACTTGAGTGAACAGAAACATGAATCTGAAGCATGCTCTG
GTTATGATGCACACTTGCAGACTAAGGAACCTCAAGATAAAAAATGTTGCTACAAAATGAAGTGA
TTTCTTATGATGTTGG
Done.