genome.fa.s1065.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001065.1 Hibiscus syriacus cultivar Beakdansim tig00002105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130476

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1811--1899	18	4.9	18	91	0	124	19	20	30	30	1.97
9911--9959	21	2.3	21	92	0	80	38	28	12	20	1.89
18188--18304	42	2.8	42	96	0	207	17	11	24	46	1.81
18189--18301	24	5.2	24	63	23	79	17	10	24	46	1.80
18592--18937	43	8.1	42	81	5	347	33	18	22	25	1.97
22551--22682	41	3.2	40	83	6	122	35	16	20	27	1.94
22575--22710	42	3.3	42	86	3	177	35	17	21	25	1.95
24654--24844	106	1.8	103	86	3	274	40	12	11	35	1.79
24654--24872	106	2.1	103	83	4	269	41	11	10	35	1.77
24675--24899	106	2.1	105	79	4	247	42	11	12	33	1.79
28960--29017	24	2.5	21	75	25	55	39	5	22	32	1.76
29215--29310	18	4.9	19	80	11	106	21	20	29	28	1.98
29215--29304	38	2.3	40	88	3	139	18	21	30	30	1.97
34254--34296	21	2.0	21	86	0	59	30	37	11	20	1.89
40821--40937	42	2.8	42	96	0	207	17	10	24	47	1.79
40822--40934	24	5.2	24	63	23	79	17	9	24	47	1.78
41225--41570	43	8.1	42	81	5	347	33	18	22	26	1.97
45162--45293	41	3.2	40	83	6	122	35	16	20	27	1.94
45186--45321	42	3.3	42	86	3	177	35	17	21	25	1.95
46672--46720	19	2.6	18	81	18	55	57	6	0	36	1.24
47254--47455	106	1.9	104	84	4	271	42	12	10	34	1.78
51497--51554	24	2.5	21	75	25	55	39	5	22	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51747--51836	18	4.6	20	82	10	107	18	21	30	30	1.97
51747--51836	38	2.3	40	88	3	139	18	21	30	30	1.97
56763--56807	21	2.1	21	87	0	63	35	35	6	22	1.80
61363--61391	10	2.9	10	100	0	58	37	31	0	31	1.58
64773--65015	128	1.9	128	98	1	400	22	15	21	40	1.91
66646--66809	82	2.0	81	98	1	319	55	7	4	32	1.49
81820--81911	46	2.0	46	97	0	175	38	15	22	23	1.92
82601--82685	28	3.0	28	82	0	98	37	21	21	20	1.94
86670--86716	2	23.5	2	87	8	69	48	0	2	48	1.13
87030--87084	24	2.3	23	84	6	65	36	14	3	45	1.63
89204--89362	79	2.0	80	96	3	295	32	13	17	35	1.89
93979--94015	16	2.3	16	95	0	65	10	10	18	59	1.59
98400--98429	15	1.9	16	93	6	53	23	30	6	40	1.80
98588--98621	15	2.2	16	89	5	52	26	26	5	41	1.78
100052--100226	29	6.1	29	82	8	198	34	3	17	44	1.65
100052--100226	57	3.1	57	83	5	219	34	3	17	44	1.65
105973--106002	10	3.0	10	95	0	51	16	20	13	50	1.78
106016--106069	25	2.2	24	80	3	63	62	16	11	9	1.52
106254--106309	14	4.0	14	79	9	69	62	10	10	16	1.54
113446--113657	20	10.5	20	65	15	62	30	22	12	34	1.91
113385--113663	60	4.7	60	71	16	152	32	23	11	32	1.90
113510--113645	40	3.4	40	84	4	184	27	23	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113428--113657	40	5.7	40	77	7	180	30	23	12	34	1.91
115632--115656	2	12.5	2	100	0	50	52	48	0	0	1.00
115879--116068	42	4.6	42	87	3	262	26	38	13	21	1.90
115882--115951	21	3.2	24	62	29	64	25	38	14	21	1.91
116168--116337	21	8.1	21	77	5	173	21	11	32	33	1.90
116179--116337	63	2.5	63	87	0	228	21	12	32	33	1.91
116709--116783	20	3.7	21	80	10	66	22	40	13	24	1.90
116663--116793	21	6.3	21	75	9	108	22	35	13	27	1.92
120165--120231	34	2.0	34	84	0	89	43	23	13	19	1.86
120194--120231	20	1.9	20	94	0	67	47	21	15	15	1.82
120234--120363	20	6.6	20	84	1	156	26	12	22	39	1.89
120235--120366	60	2.2	59	87	2	185	26	12	21	39	1.89
123857--123895	15	2.5	15	83	4	51	66	0	5	28	1.12
124033--124102	19	3.5	21	74	21	62	34	14	20	31	1.92
124073--124199	40	3.2	40	80	5	125	37	13	22	27	1.91
124073--124200	20	6.4	20	68	11	66	37	13	21	27	1.91
124184--124244	20	3.0	20	90	4	86	32	16	18	32	1.93

Tables:   1

The End!