genome.fa.s1066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001066.1 Hibiscus syriacus cultivar Beakdansim tig00002112_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58874

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5326--5451	23	5.7	23	86	5	136	22	16	27	33	1.95
5347--5478	46	3.0	44	83	6	149	24	15	27	32	1.96
5368--5478	23	4.9	23	83	4	145	24	16	27	32	1.96
16614--16688	38	2.0	37	84	5	98	48	4	1	46	1.29
23912--23943	15	2.1	15	94	0	55	6	25	15	53	1.65
33160--33215	10	5.2	10	78	16	58	10	12	23	53	1.69
33178--33208	14	2.2	14	94	0	53	9	12	22	54	1.67
33168--33228	24	2.5	24	89	5	88	13	11	19	55	1.67
34309--34381	16	4.7	16	83	9	82	12	9	20	57	1.62
34442--34474	16	2.1	16	100	0	66	6	12	24	57	1.57
38036--38088	25	2.1	26	85	3	72	20	9	28	41	1.83
40895--40988	35	2.7	34	79	12	111	41	1	11	45	1.47
40957--41015	24	2.5	24	91	2	93	42	0	10	47	1.37
40921--41049	60	2.1	62	85	5	176	43	0	9	47	1.35
40980--41266	36	7.9	37	79	10	256	42	1	8	48	1.41
40989--41108	39	3.1	39	83	4	138	45	2	6	45	1.43
41073--41176	31	3.2	32	85	11	138	44	0	7	47	1.38
40998--41206	106	2.0	106	85	5	289	44	1	7	47	1.39
41076--41207	13	10.0	13	66	14	56	42	0	7	49	1.36
41274--41342	4	17.0	4	88	8	104	24	2	0	72	0.98
46716--46897	95	1.9	95	86	4	260	35	18	17	29	1.93
48260--48340	36	2.2	37	88	2	119	33	20	9	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48355--48474	36	3.4	35	77	7	129	27	20	9	43	1.82
48260--48528	134	2.0	138	88	3	402	28	19	10	41	1.84
48555--48675	36	3.4	36	80	12	135	26	19	10	42	1.84
48289--49043	201	3.7	200	79	11	745	28	18	10	42	1.83
48571--48682	33	3.1	36	75	10	113	25	19	10	44	1.83
48706--48820	36	3.1	37	89	2	171	26	18	11	43	1.84
48828--49057	36	6.6	36	75	13	212	29	18	9	42	1.82
48488--49057	137	4.2	138	90	3	832	28	18	10	42	1.84
48863--49107	101	2.4	101	87	2	350	28	17	9	44	1.80
49124--49249	34	3.6	35	77	11	141	41	16	11	30	1.83
49895--50209	38	8.9	35	74	16	115	44	2	7	45	1.44
49931--49974	23	1.9	23	90	0	70	45	0	6	47	1.29
49931--49987	25	2.4	23	85	5	69	45	0	7	47	1.30
49895--50027	61	2.2	61	89	6	198	45	3	7	44	1.47
49954--50047	39	2.4	40	83	3	111	47	3	6	42	1.45
50015--50071	13	4.0	13	73	20	51	42	1	10	45	1.49
49953--50153	108	1.9	108	87	4	298	46	1	6	44	1.41
50011--50117	31	3.2	31	80	15	124	44	0	7	46	1.37
50043--50217	38	4.6	38	83	5	203	42	1	8	48	1.40
50043--50217	77	2.3	75	81	6	201	42	1	8	48	1.40
49972--50209	39	6.4	37	80	10	229	44	2	7	45	1.43
50219--50276	4	14.0	4	79	13	64	22	3	0	74	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50220--50268	21	2.3	21	89	6	73	22	4	0	73	1.00
50215--50276	30	2.1	29	88	8	90	20	4	0	74	1.00
52660--52930	122	2.2	123	89	3	415	43	8	17	30	1.78

Tables:   1

The End!