genome.fa.s1067.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001067.1 Hibiscus syriacus cultivar Beakdansim tig00002113_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101672

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5216--5253	20	1.9	20	94	0	67	31	34	15	18	1.92
5264--5426	66	2.5	66	90	2	249	30	23	16	29	1.96
5264--5444	64	2.8	65	86	5	240	29	24	17	29	1.97
7884--7928	15	3.0	14	81	15	54	51	6	2	40	1.41
21021--21057	2	19.0	2	94	5	67	0	51	0	48	1.00
22118--22263	72	2.0	72	98	0	283	47	3	9	39	1.53
22886--22920	10	3.4	10	96	4	61	68	2	0	28	1.04
23011--23056	18	2.6	17	80	6	56	45	4	6	43	1.49
25852--25878	14	1.9	14	100	0	54	59	3	0	37	1.15
31975--32113	35	3.9	35	88	1	206	38	20	22	19	1.94
31970--32113	71	2.0	71	94	0	252	39	19	22	18	1.92
36675--36723	10	4.8	11	78	16	61	16	18	26	38	1.91
36676--36730	9	5.6	10	79	12	69	14	20	29	36	1.92
36750--36784	18	1.9	18	100	0	70	17	48	22	11	1.79
36743--36773	13	2.4	13	100	0	62	16	48	22	12	1.80
36786--36851	29	2.3	29	86	0	87	25	7	25	40	1.82
36786--36860	29	2.6	28	81	8	78	25	6	25	42	1.79
37586--37654	24	2.9	24	73	0	66	24	11	18	44	1.83
43886--43934	10	4.8	11	78	16	61	16	18	26	38	1.91
43887--43941	9	5.6	10	79	12	69	14	20	29	36	1.92
43974--44008	18	1.9	18	100	0	70	17	48	22	11	1.79
43954--43997	13	3.4	13	96	0	79	15	47	20	15	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43944--44008	26	2.5	26	68	26	64	15	46	20	18	1.84
44010--44075	29	2.3	29	86	0	87	25	7	25	40	1.82
44010--44084	29	2.6	28	81	8	78	25	6	25	42	1.79
44811--44879	24	2.9	24	73	0	66	24	11	18	44	1.83
52599--52633	16	2.2	16	94	0	61	20	28	14	37	1.91
52629--52664	16	2.2	16	90	0	54	30	13	19	36	1.91
53067--53120	21	2.6	21	84	0	72	16	0	31	51	1.45
53270--53296	13	2.1	13	100	0	54	55	0	0	44	0.99
53270--53312	13	3.1	14	86	6	52	55	0	2	41	1.12
53394--53431	20	1.9	19	89	5	58	23	5	18	52	1.65
53605--53671	14	4.8	14	78	7	64	17	0	26	55	1.43
53605--53670	21	3.2	20	76	8	51	18	0	27	54	1.44
53688--53729	9	4.6	9	80	16	50	40	2	4	52	1.35
53696--53747	19	2.7	20	90	3	79	38	1	7	51	1.42
53760--53786	13	2.1	13	100	0	54	55	0	0	44	0.99
53760--53802	13	3.1	14	86	6	52	55	0	2	41	1.12
54406--54470	30	2.2	30	91	5	105	46	3	6	44	1.44
54556--54600	22	2.0	23	95	4	83	46	0	8	44	1.34
54769--54829	21	2.9	22	70	7	63	19	0	31	49	1.49
54909--54949	20	2.0	20	85	0	55	31	7	7	53	1.56
55077--55195	64	1.9	63	84	8	161	42	5	1	51	1.34
55079--55198	57	2.1	58	80	12	131	43	5	1	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55386--55462	19	4.0	20	81	10	88	28	28	0	42	1.56
55386--55462	39	2.0	39	84	5	102	28	28	0	42	1.56
55524--55716	2	99.0	2	66	21	90	46	3	3	47	1.34
55529--55646	13	8.8	13	77	13	89	45	3	3	47	1.36
62666--62700	13	2.7	13	86	0	52	74	0	2	22	0.95
62810--62836	13	2.1	13	100	0	54	40	7	7	44	1.60
62746--62989	111	2.2	109	83	11	309	42	9	4	43	1.56
62746--62999	73	3.4	72	81	11	271	42	9	4	43	1.56
62746--62989	35	6.6	37	77	14	218	42	9	4	43	1.56
62767--63008	37	6.6	35	82	7	227	42	10	4	43	1.58
63620--63664	20	2.3	20	85	11	58	75	4	6	13	1.15
64618--64674	29	2.0	29	82	0	69	29	3	7	59	1.40
64984--65074	45	2.0	45	97	0	173	35	13	12	39	1.81
65788--65839	23	2.2	23	86	3	68	30	0	1	67	1.02
68855--68970	58	2.0	58	98	0	223	40	20	15	23	1.91
71346--71378	17	1.9	17	88	11	50	54	21	6	18	1.64
71582--71736	74	2.1	74	98	1	303	48	3	27	20	1.67
83706--83810	36	2.9	37	86	2	167	47	14	4	33	1.65
85725--85755	16	1.9	16	93	0	53	25	6	12	54	1.62
85784--85825	16	2.6	16	88	0	66	30	7	11	50	1.66
87578--87627	23	2.0	26	81	14	61	50	8	10	32	1.65
87749--87845	46	2.1	46	92	0	158	25	15	21	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87749--87859	23	4.8	23	85	0	132	27	15	21	36	1.93
94646--94739	40	2.3	40	96	0	170	34	9	18	38	1.83
94963--95036	23	3.2	22	83	7	85	17	27	21	33	1.96
95208--95255	2	24.0	2	100	0	96	50	0	0	50	1.00

Tables:   1

The End!