Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001069.1 Hibiscus syriacus cultivar Beakdansim tig00002117_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119318

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2491--2828
114
3.0
114
93
0
568
31
19
14
34
1.92
7200--7240
20
2.0
20
90
0
64
60
9
9
19
1.55
8800--8825
11
2.4
11
100
0
52
34
0
7
57
1.27
9323--9372
21
2.3
23
80
13
61
66
0
0
34
0.92
9543--9576
3
11.3
3
100
0
68
67
0
0
32
0.91
10943--10984
3
14.0
3
85
9
50
64
0
0
35
0.94
19538--19584
21
2.2
21
96
0
85
40
34
6
19
1.77
20391--20426
18
1.9
18
88
5
54
33
0
2
63
1.08
20949--20990
20
2.0
22
86
9
61
47
7
0
45
1.30
21049--21090
17
2.3
19
88
8
61
42
4
2
50
1.36
21859--22100
130
1.9
126
92
3
403
38
4
16
40
1.68
28839--28868
15
2.0
15
93
0
51
76
6
0
16
0.99
29464--29518
21
2.5
22
82
8
67
30
1
0
67
1.01
29468--29540
23
3.2
23
84
9
80
31
4
2
61
1.29
36301--36336
18
1.9
18
88
5
54
80
0
0
19
0.71
39153--39179
12
2.2
12
100
0
54
59
14
0
25
1.36
48973--49008
10
3.5
10
85
7
54
52
0
0
47
1.00
55397--55436
2
20.0
2
100
0
80
50
0
0
50
1.00
57308--57415
30
3.5
30
66
18
76
32
37
10
20
1.86
57289--57410
64
1.9
64
93
0
208
34
34
11
19
1.88
75057--75102
3
15.7
3
86
4
67
60
0
2
36
1.09
75048--75102
23
2.5
23
85
5
69
56
0
3
40
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75037--75097
26
2.3
26
80
0
68
55
0
3
40
1.16
76549--76620
30
2.3
30
95
4
126
37
18
2
41
1.65
76861--76903
17
2.5
17
88
7
61
60
25
0
13
1.34
78820--78859
21
1.9
21
89
0
62
10
25
40
25
1.86
82702--82741
21
1.9
21
85
10
55
35
10
2
52
1.48
85129--85216
43
2.0
43
97
0
167
32
17
21
28
1.96
92407--92445
20
2.0
20
89
0
60
33
23
10
33
1.88
93751--93782
2
15.5
2
93
6
55
50
0
3
46
1.17
93954--94001
21
2.3
21
88
0
69
25
0
31
43
1.55
93934--94021
14
6.4
14
73
12
65
27
0
30
42
1.56
93995--94048
20
2.7
19
82
5
54
24
1
31
42
1.65
94595--94629
15
2.2
16
90
5
54
14
2
5
77
1.07
94605--94638
16
2.2
15
89
5
50
11
8
5
73
1.24
95946--96007
26
2.4
26
86
5
81
43
0
14
41
1.45
101121--101158
20
1.9
20
94
0
67
26
18
21
34
1.96
101852--101891
19
2.0
20
86
13
57
57
0
32
10
1.32
116123--116182
28
2.1
28
81
6
68
36
6
8
48
1.60
117818--117847
14
2.1
14
93
0
51
43
3
6
46
1.46

Tables:   1

The End!