Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000107.1 Hibiscus syriacus cultivar Beakdansim tig00000191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91607

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1854--1893
21
1.9
21
89
0
62
25
40
25
10
1.86
3805--3843
16
2.5
15
84
8
51
15
0
30
53
1.42
8718--8827
51
2.2
49
88
6
161
16
11
13
58
1.64
14793--14922
67
1.9
69
93
3
228
36
7
3
52
1.49
14803--14908
33
3.2
33
69
12
108
33
6
3
55
1.44
14937--14979
19
2.4
17
80
7
50
39
0
0
60
0.97
24448--24481
13
2.6
13
85
0
50
47
2
0
50
1.16
24460--24505
15
3.1
15
80
17
51
43
0
8
47
1.34
25516--25637
54
2.3
54
89
2
183
9
8
51
30
1.64
25518--25651
54
2.5
54
86
2
180
9
7
52
30
1.62
25603--25688
42
2.0
42
88
4
129
12
4
54
27
1.58
31637--31958
161
2.0
161
99
0
635
35
13
18
32
1.90
32523--32564
3
14.0
3
94
0
57
7
0
26
66
1.17
35469--35506
14
2.6
15
83
8
51
34
2
0
63
1.09
38479--38535
3
19.0
3
89
7
89
64
0
0
35
0.93
38761--39913
113
10.0
113
82
8
1331
28
18
16
35
1.93
39186--39877
367
1.9
367
95
0
1260
28
19
15
36
1.93
40704--40996
94
3.1
94
94
1
491
34
22
15
28
1.94
41781--41855
10
7.3
9
76
24
69
1
14
0
84
0.70
41781--41859
21
3.8
21
90
5
117
1
16
0
82
0.74
41784--41855
32
2.3
31
85
7
92
1
15
0
83
0.72
54634--54665
17
1.9
16
93
6
55
59
0
0
40
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54632--54693
3
20.0
3
83
6
52
56
0
0
43
0.99
59850--59883
2
17.5
2
93
6
61
52
0
0
47
1.00
63895--63951
29
2.0
29
86
6
80
50
0
1
47
1.11
63916--64133
111
2.0
108
81
6
251
45
7
7
38
1.62
64207--64246
2
20.0
2
84
0
53
42
0
0
57
0.98
64247--64302
3
19.3
3
81
7
71
71
0
1
26
0.96
64247--64302
20
2.8
21
86
8
89
71
0
1
26
0.96
64244--64300
26
2.2
25
87
9
78
71
0
1
26
0.95
65583--65644
3
22.0
3
77
12
69
59
0
0
40
0.97
65583--65625
5
8.0
5
87
12
59
60
0
0
39
0.97
65572--65644
12
6.5
11
82
7
69
57
0
0
42
0.98
65572--65644
32
2.3
33
81
11
89
57
0
0
42
0.98
65572--65643
15
4.7
15
77
14
76
56
0
0
43
0.99
65800--66284
76
6.4
76
97
0
898
34
22
19
23
1.96
66455--66883
73
5.9
73
95
0
734
38
12
18
31
1.88
66455--66883
145
2.9
145
94
1
741
38
12
18
31
1.88
66455--66883
218
2.0
219
93
0
743
38
12
18
31
1.88
66918--67244
165
2.0
165
89
1
503
37
13
13
36
1.84
67757--67811
22
2.5
22
93
0
101
40
14
10
34
1.81
74490--74523
6
5.7
6
89
0
50
52
5
14
26
1.64
76057--76124
28
2.5
27
86
9
86
61
1
2
33
1.20
76069--76124
28
2.0
29
89
3
87
60
1
3
33
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76081--76153
28
2.5
28
82
6
74
61
0
6
31
1.22
76616--76827
108
2.0
105
80
6
239
43
9
8
37
1.69
76913--76961
3
17.3
3
79
12
59
71
0
2
26
0.97
76912--76961
25
2.0
25
92
0
82
72
0
2
26
0.96
78233--78297
3
22.0
3
78
12
64
58
0
0
41
0.98
78233--78281
5
9.0
5
85
14
62
59
0
0
40
0.98
78233--78297
15
4.4
15
81
16
73
58
0
0
41
0.98
78233--78297
21
3.2
20
78
20
71
58
0
0
41
0.98
87297--87370
37
2.0
37
84
7
98
47
5
1
45
1.34
89164--89211
21
2.2
22
96
3
89
35
4
22
37
1.74
89077--89263
83
2.2
86
85
7
251
43
8
13
34
1.74

Tables:   1

The End!