genome.fa.s1070.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001070.1 Hibiscus syriacus cultivar Beakdansim tig00002119_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122266

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1237--1481	43	5.9	41	75	11	173	24	18	23	33	1.97
1237--1456	85	2.6	86	79	10	224	25	19	22	32	1.97
1428--1542	44	2.7	41	77	17	119	28	16	21	33	1.95
5510--5544	11	3.3	11	84	8	54	74	2	8	14	1.17
5511--5545	10	3.4	10	88	4	52	71	2	8	17	1.23
9621--9671	21	2.4	21	93	0	84	21	25	15	37	1.93
11841--12326	75	6.5	75	79	6	461	40	19	9	30	1.83
12666--12707	19	2.1	21	83	16	54	21	19	9	50	1.75
15733--15807	28	2.6	28	87	8	107	17	38	20	24	1.93
15782--15956	68	2.6	69	74	13	171	24	25	21	29	1.99
16104--16265	76	2.1	76	87	2	236	39	16	15	29	1.89
17094--17139	19	2.3	20	85	7	58	10	32	26	30	1.90
17252--17612	75	4.8	76	85	3	473	42	21	9	27	1.83
17258--17612	148	2.4	150	86	2	484	42	21	9	27	1.83
17483--17722	130	1.8	129	80	7	288	41	17	10	30	1.83
27142--27192	27	2.0	27	88	7	79	43	19	17	19	1.89
29829--29933	31	3.4	31	89	5	160	12	26	31	29	1.93
30871--30920	23	2.2	23	89	3	75	46	4	0	50	1.20
31014--31074	30	2.1	29	87	9	88	55	1	3	39	1.26
35666--35699	17	2.0	17	94	0	59	38	5	11	44	1.65
39606--39668	18	3.5	18	91	0	108	20	25	22	31	1.98
44293--44517	69	3.3	69	79	2	256	23	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44293--44545	69	3.7	69	76	6	190	24	25	21	28	1.99
52297--52364	28	2.4	28	87	0	91	32	1	23	42	1.63
56356--56393	15	2.7	14	88	8	51	28	28	21	21	1.98
58074--58132	24	2.5	24	82	0	73	22	8	18	50	1.73
60154--60223	15	4.9	14	82	5	86	21	24	25	28	1.99
60155--60223	14	4.7	15	82	5	88	21	24	26	27	1.99
60155--60223	29	2.4	29	100	0	138	21	24	26	27	1.99
62352--62444	24	3.9	24	79	0	96	21	15	15	48	1.81
62353--62444	48	1.9	48	84	0	121	20	15	15	48	1.80
68600--68664	7	9.3	7	76	6	69	52	1	1	44	1.19
69121--69283	69	2.4	69	80	2	175	23	26	18	30	1.98
69482--69899	76	5.5	76	86	1	550	41	19	10	28	1.84
69725--70057	183	1.8	183	87	1	497	39	19	11	29	1.87
69915--70061	76	1.9	76	86	2	206	38	19	12	29	1.88
75137--75340	76	2.7	75	80	6	223	41	18	13	27	1.87
79312--79374	28	2.2	29	86	5	85	31	1	22	44	1.62
81460--81695	69	3.4	69	77	3	251	23	26	20	29	1.99
83207--83335	69	1.9	69	80	3	152	24	22	21	31	1.99
83509--83880	76	4.9	76	85	3	457	40	19	11	28	1.87
83521--83880	151	2.4	151	84	3	456	40	19	11	28	1.86
83881--84115	76	3.1	76	82	3	260	40	19	11	28	1.86
83678--84067	210	1.9	207	86	5	552	41	19	10	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85020--85327	83	3.7	83	72	5	255	35	17	14	32	1.90
87561--87637	29	2.7	29	89	0	109	33	14	12	38	1.84
88863--88913	24	2.1	24	81	0	57	25	11	49	13	1.76
92313--92394	29	2.8	29	83	1	101	34	13	10	41	1.79
105565--105624	31	1.9	31	96	0	111	41	13	16	28	1.86
107729--107768	20	2.0	20	85	5	53	52	0	2	45	1.14
110798--110840	21	2.1	20	83	12	52	44	18	9	27	1.80
111117--111196	31	2.6	31	85	0	115	42	21	16	20	1.89
121434--121492	21	2.8	20	87	10	82	47	27	5	20	1.71

Tables:   1

The End!