genome.fa.s1072.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001072.1 Hibiscus syriacus cultivar Beakdansim tig00002122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82625

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082--1126	11	3.3	14	76	23	51	60	11	0	28	1.31
1082--1131	27	1.9	26	88	8	75	62	12	0	26	1.30
16396--16483	29	3.0	29	73	14	74	35	0	7	56	1.28
17234--17314	39	2.1	39	97	0	153	46	14	8	29	1.75
19495--19541	24	2.0	23	87	4	67	42	6	0	51	1.27
22310--22363	24	2.2	24	90	0	81	44	11	16	27	1.82
22571--22612	19	2.2	19	87	8	59	78	7	0	14	0.95
28747--28904	21	7.8	20	72	7	86	38	25	17	18	1.92
28871--29064	20	9.6	20	81	5	221	35	25	19	19	1.95
28871--29064	60	3.2	60	83	0	253	35	25	19	19	1.95
29446--29516	33	2.2	33	92	0	115	11	22	18	47	1.80
29595--29702	21	5.7	20	72	15	86	46	18	23	12	1.82
29594--29671	41	1.9	41	94	0	138	46	15	24	14	1.83
29669--29713	19	2.4	19	92	0	72	46	26	17	8	1.78
29709--29814	19	6.1	19	72	20	106	11	22	20	45	1.83
29731--29787	14	3.7	14	72	20	51	10	22	22	43	1.84
29714--29806	33	2.8	33	96	0	168	10	21	22	45	1.83
31510--32160	93	7.1	93	97	1	1249	22	12	19	45	1.83
31510--32160	184	3.5	186	97	1	1249	22	12	19	45	1.83
31510--32160	277	2.4	277	98	0	1261	22	12	19	45	1.83
32208--32336	19	7.3	19	75	17	125	46	27	16	9	1.77
32242--32336	33	2.9	33	91	0	154	47	27	16	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32208--32336	52	2.4	54	76	19	146	46	27	16	9	1.77
32332--32465	19	7.6	19	76	15	119	11	19	23	45	1.82
32354--32409	14	3.7	14	80	17	67	10	21	23	44	1.83
32337--32428	32	2.8	33	91	3	159	10	20	21	46	1.81
34385--34420	14	2.6	14	90	0	54	30	0	22	47	1.52
34527--34623	19	5.4	18	83	13	112	46	17	20	15	1.84
34527--34641	51	2.2	53	93	3	198	44	18	22	14	1.86
34670--34853	19	10.4	19	79	17	227	14	21	17	46	1.83
34648--34853	52	3.9	52	83	9	276	14	21	17	46	1.84
34670--34886	71	3.1	72	92	3	347	13	21	18	46	1.84
34689--34867	33	5.2	33	85	10	261	13	21	18	46	1.83
37077--37101	12	2.1	12	100	0	50	0	28	0	72	0.86
38002--38231	20	11.5	20	84	1	228	20	18	24	36	1.94
38218--38300	21	4.0	21	73	6	78	25	16	24	33	1.96
38198--38296	42	2.4	43	77	11	100	21	18	23	37	1.94
43378--43422	22	2.0	23	86	4	65	46	0	11	42	1.39
47290--47346	30	1.9	30	92	0	96	29	35	8	26	1.87
48005--48788	392	2.0	390	95	0	1415	47	15	10	26	1.78
51536--51611	35	2.1	37	92	4	129	61	15	11	10	1.56
54946--54979	17	2.0	17	94	0	59	44	0	0	55	0.99
55958--55999	17	2.6	16	76	23	52	66	9	0	23	1.21
58097--58151	18	3.1	19	84	7	62	40	1	1	56	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60925--61063	60	2.3	61	78	5	147	35	18	16	29	1.93
67939--68056	59	2.0	59	100	0	236	23	10	23	42	1.85
74915--75075	64	2.5	63	80	9	184	26	19	19	34	1.96
78823--78856	18	1.9	17	88	5	50	38	2	5	52	1.41
81754--81787	7	4.9	7	96	0	59	47	38	0	14	1.45

Tables:   1

The End!