genome.fa.s1073.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001073.1 Hibiscus syriacus cultivar Beakdansim tig00002125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143230

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13070--13113	16	2.8	15	83	10	52	40	2	6	50	1.42
15564--15791	64	3.5	65	83	4	248	27	16	25	31	1.97
15584--15743	65	2.5	64	90	1	239	29	16	23	30	1.96
15754--15791	20	1.9	20	94	0	67	18	15	34	31	1.92
15584--15791	65	3.2	65	84	9	232	27	16	24	31	1.96
21328--21368	15	2.8	15	88	3	66	21	34	7	36	1.82
23149--23253	45	2.3	46	91	1	167	31	17	20	31	1.95
29231--29281	20	2.5	20	81	6	59	31	29	11	27	1.92
31428--31480	21	2.5	21	93	0	88	28	30	22	18	1.98
31489--31777	21	14.0	21	73	10	179	22	19	22	35	1.96
31514--31774	63	4.2	61	76	11	262	22	18	22	36	1.95
31495--31707	40	5.2	40	87	5	284	22	18	24	35	1.96
32498--32704	21	9.9	21	74	14	178	37	22	19	20	1.94
32519--32745	42	5.4	42	91	2	350	36	23	19	20	1.95
32540--32760	21	10.6	21	72	13	143	36	24	19	20	1.95
33719--33748	2	15.0	2	100	0	60	50	0	0	50	1.00
35204--35268	26	2.4	25	82	14	76	47	1	0	50	1.10
38965--39057	37	2.6	35	80	17	102	45	1	0	53	1.07
39073--39129	14	3.9	14	79	6	60	52	0	1	45	1.11
39108--39180	29	2.5	29	72	18	71	52	1	0	46	1.09
39122--39186	23	2.9	23	77	11	55	47	1	0	50	1.10
39123--39182	26	2.3	26	83	8	70	48	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39271--39311	16	2.7	16	81	7	50	56	4	0	39	1.21
39306--39339	14	2.4	14	90	0	50	38	5	2	52	1.41
43261--43294	15	2.2	15	89	5	50	5	26	17	50	1.69
44332--45703	343	4.0	343	98	0	2611	32	17	15	34	1.91
54949--54986	14	2.7	14	95	0	67	34	21	7	36	1.82
59327--59461	31	4.2	31	72	16	103	41	16	27	14	1.87
67724--67770	23	2.1	23	84	7	62	8	23	29	38	1.84
67798--67838	16	2.6	16	92	7	66	51	0	0	48	1.00
67797--67839	18	2.3	18	88	8	59	53	0	0	46	1.00
68790--69005	99	2.2	99	93	0	360	34	17	16	31	1.92
69591--69648	22	2.6	22	91	2	89	41	17	10	31	1.83
76993--77034	23	1.9	23	85	9	61	11	19	30	38	1.88
77061--77093	16	2.2	15	89	10	50	45	3	0	51	1.16
77610--77662	3	17.7	3	90	7	81	33	0	1	64	1.05
77821--77877	29	2.0	29	92	0	96	29	21	24	24	1.99
79342--79557	59	3.7	58	79	7	168	18	16	9	55	1.67
79342--79529	29	6.3	30	74	11	147	19	15	9	55	1.67
79342--79557	30	7.3	30	75	12	97	18	16	9	55	1.67
79458--79578	30	4.1	30	73	10	88	15	14	12	57	1.66
79384--79578	59	3.3	59	79	7	157	16	14	10	57	1.65
89818--89860	11	4.0	11	93	6	79	53	27	0	18	1.45
90122--90166	21	2.1	21	84	8	56	31	15	4	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91272--91527	126	2.0	125	90	2	397	37	12	10	39	1.77
91497--91573	33	2.3	33	88	0	109	32	20	2	44	1.66
92872--93151	92	3.1	92	94	1	474	38	11	22	27	1.89
93119--93182	31	2.1	31	88	2	94	31	18	23	26	1.98
93028--93269	121	2.0	122	90	2	380	36	13	22	27	1.92
93149--93364	91	2.4	91	88	1	317	35	13	21	28	1.92
92936--93368	213	2.0	214	89	4	671	36	12	22	28	1.91
100206--100624	208	2.0	207	96	0	766	40	21	15	21	1.90
104414--104444	15	2.1	15	93	0	53	45	0	0	54	0.99
112985--113041	23	2.4	23	80	16	55	47	3	1	47	1.29
114631--114707	21	3.6	21	71	13	68	25	19	16	37	1.93
117825--117850	11	2.4	11	100	0	52	23	7	42	26	1.81
127022--127055	16	2.1	17	88	5	52	44	20	0	35	1.52
129432--129544	20	5.6	20	82	4	118	30	21	15	33	1.94
129411--129512	40	2.5	42	80	7	129	33	20	14	31	1.93
129425--129544	62	2.0	61	81	5	143	30	20	14	34	1.92
129475--129613	40	3.4	40	78	5	118	28	22	12	36	1.90
129517--129664	60	2.5	60	78	2	145	29	20	13	36	1.91
129616--129664	20	2.4	21	77	19	59	30	20	14	34	1.92
133343--133438	20	4.8	20	83	5	131	43	22	9	23	1.82
133343--133455	40	2.8	41	82	5	142	41	23	8	25	1.83
133343--133455	20	5.7	20	80	8	122	41	23	8	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133343--133455	60	1.9	60	88	3	174	41	23	8	25	1.83
133456--133495	20	2.0	20	90	4	64	17	15	20	47	1.83
136904--137035	21	6.3	21	78	7	117	28	13	36	21	1.92
137361--137530	21	8.1	21	78	5	182	34	32	11	21	1.89
137362--137521	63	2.5	63	89	0	239	34	33	11	20	1.89
137630--137870	42	6.0	42	78	12	258	21	12	39	26	1.90
137747--137816	24	3.2	24	62	29	64	21	14	38	25	1.91
137752--137820	21	3.3	21	64	28	56	20	13	42	24	1.87
140029--140281	20	12.6	20	68	13	126	33	11	23	32	1.90
140027--140178	40	3.8	38	82	11	178	35	11	24	28	1.91
140025--140238	40	5.3	38	75	12	171	33	11	23	31	1.91

Tables:   1

The End!